RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_129S1SvImJ_G0017303	Gene ID		Accession	-
Symbol	Ddx50	Alias	-	Full Name	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Status	Confidence	Length	38154 bases	Strand	Minus strand
Position	10 : 62058963 - 62097116	RNA binding domain	ResIII , DEAD , GUCT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0025467	ResIII	PF04851	5.8e-10	1
MGP_129S1SvImJ_P0025467	DEAD	PF00270	1.9e-47	2
MGP_129S1SvImJ_P0025467	GUCT	PF08152	1.7e-27	3
MGP_129S1SvImJ_P0025466	ResIII	PF04851	6e-10	1
MGP_129S1SvImJ_P0025466	DEAD	PF00270	1.6e-47	2
MGP_129S1SvImJ_P0025466	GUCT	PF08152	1.4e-27	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Ddx50-201	MGP_129S1SvImJ_T0025466	2632	669aa	MGP_129S1SvImJ_P0025466"/note="transcript_id=MGP_129S1SvImJ_T0025466
-	MGP_129S1SvImJ_T0025467	2527	734aa	MGP_129S1SvImJ_P0025467"/note="transcript_id=MGP_129S1SvImJ_T0025467

Gene Model

Click here to download MGP_129S1SvImJ_G0017303's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0017303's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092049	40.0415	21.7842	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	26.2943	14.3052
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073906	27.8032	16.0183	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	33.1063	19.0736
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0080594	45.7143	26.3736	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	28.3379	16.3488
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0035790	25.9136	14.0642	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	31.8801	17.3025
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0095689	33.0816	19.9396	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	29.8365	17.9837
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0024110	33.1818	19.697	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	29.8365	17.7112
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0030028	49.2105	28.6842	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	25.4768	14.8501
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033049	26.4801	14.8547	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	33.515	18.8011
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037224	24.9031	14.6318	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	35.0136	20.5722
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0062999	28.3636	15.3939	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	31.8801	17.3025
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0041722	36.0429	21.4724	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	32.0163	19.0736
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0047402	43.9252	22.6636	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	25.6131	13.2153
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090479	32.7824	17.6309	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	16.2125	8.71935
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090482	36.5854	20.0542	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	18.3924	10.0817
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.9817	19.4139	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	26.0218	14.4414
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	62.2797	52.2914	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	72.2071	60.6267
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0078153	25.6944	13.1944	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	5.04087	2.58856
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033934	47.6886	27.4939	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	26.703	15.3951
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0031316	35.2843	19.8997	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	28.7466	16.2125
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0034467	28.2432	15.9459	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	28.4741	16.0763
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0091690	38.2231	22.5207	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	25.2044	14.8501
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0053595	31.5866	16.885	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	29.564	15.8038
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0059379	33.8158	21.8421	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	35.0136	22.6158
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0021795	35.6061	20	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	32.0163	17.9837
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037213	35.6913	22.0257	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	30.2452	18.6649
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073292	33.4898	19.4053	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	29.1553	16.8937
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0093339	34.3653	20.8978	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	30.2452	18.3924
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092358	28.2286	16.2286	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	33.6512	19.346
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0043873	48.0392	28.9216	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	26.703	16.0763
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0038189	31.7308	19.2308	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	31.4714	19.0736
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0083302	18.0099	7.8125	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	29.8365	12.9428
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	36.8336	19.3861	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	31.0627	16.3488
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090310	37.4074	21.8519	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	27.5204	16.0763
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0042471	27.3504	16.1172	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	30.5177	17.9837
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0074463	34.1424	18.932	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	28.7466	15.9401
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033113	40.6551	23.8921	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	28.7466	16.8937
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089602	44.9649	23.4192	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	26.158	13.624
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089172	41.875	23.5417	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	27.3842	15.3951

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	99.7275	99.455	mus_caroli	MGP_CAROLIEiJ_P0023134	99.7275	99.455
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_cbaj	MGP_CBAJ_P0025152	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	86.921	86.921	mus_musculus_akrj	MGP_AKRJ_P0025400	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0024770	99.8639	99.8639
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0025261	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0025259	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_spretus	MGP_SPRETEiJ_P0024279	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0024754	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_dba2j	MGP_DBA2J_P0025267	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0025406	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0025949	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_aj	MGP_AJ_P0025442	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	99.8638	99.5913	mus_pahari	MGP_PahariEiJ_P0086305	99.8638	99.5913
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	99.7275	99.0463	rattus_norvegicus	ENSRNOP00000097507	99.7275	99.0463
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus	ENSMUSP00000020270	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0025904	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0024479	100	100
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	99.8638	99.8638	mus_spicilegus	ENSMSIP00000036560	99.8638	99.8638
MGP_129S1SvImJ_G0017303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	99.8638	99.8638	mus_musculus_lpj	MGP_LPJ_P0025381	99.8638	99.8638

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression