RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_129S1SvImJ_G0017302	Gene ID		Accession	-
Symbol	Ddx21	Alias	-	Full Name	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Status	Confidence	Length	23308 bases	Strand	Minus strand
Position	10 : 62021205 - 62044512	RNA binding domain	ResIII , DEAD , GUCT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0025465	ResIII	PF04851	2.8e-07	1
MGP_129S1SvImJ_P0025465	DEAD	PF00270	1.4e-45	2
MGP_129S1SvImJ_P0025465	GUCT	PF08152	2.6e-29	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Ddx21-201	MGP_129S1SvImJ_T0025465	4742	851aa	MGP_129S1SvImJ_P0025465"/note="transcript_id=MGP_129S1SvImJ_T0025465

Gene Model

Click here to download MGP_129S1SvImJ_G0017302's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0017302's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092049	42.7386	23.444	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	24.2068	13.2785
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073906	28.1465	16.2471	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.9072	16.6863
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	72.2071	60.6267	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	62.2797	52.2914
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0080594	46.8132	28.1319	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	25.0294	15.0411
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0035790	28.5714	16.1683	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	30.3173	17.1563
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0095689	35.6495	19.9396	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	27.7321	15.5112
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0024110	35.4545	19.697	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	27.4971	15.2761
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0030028	49.4737	28.6842	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	22.0917	12.8085
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033049	27.3412	15.3929	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	29.8472	16.8038
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037224	26.5504	14.9225	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	32.1974	18.0964
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0062999	30.0606	16.1212	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	29.1422	15.6287
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0041722	37.2699	22.0859	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.5546	16.9213
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0047402	44.6262	24.2991	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	22.4442	12.2209
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090479	38.843	21.2121	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	16.5687	9.04818
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090482	41.1924	22.4932	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	17.8613	9.75323
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.348	19.7802	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	22.6792	12.691
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0078153	33.3333	13.8889	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	5.64042	2.35018
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033934	50.1217	28.9538	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	24.2068	13.9835
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0031316	40.6355	22.5753	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.5546	15.8637
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0034467	27.1622	16.0811	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	23.6193	13.9835
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0091690	41.9422	24.1736	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	23.8543	13.7485
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0053595	31.7322	16.4483	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	25.6169	13.2785
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0059379	36.0526	21.9737	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	32.1974	19.624
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0021795	37.1212	20.303	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.7897	15.7462
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037213	38.4244	22.6688	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.0846	16.5687
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073292	37.4022	20.0313	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.0846	15.0411
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0093339	38.0805	23.3746	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.9072	17.7438
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092358	29.6	17.0286	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	30.4348	17.5088
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0043873	48.0392	29.1667	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	23.0317	13.9835
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0038189	33.2418	18.8187	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.4371	16.0987
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0083302	19.9836	8.55263	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.5546	12.2209
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	39.7415	21.6478	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.9072	15.7462
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090310	39.2593	21.6667	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	24.9119	13.7485
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0042471	30.6471	17.8266	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	29.4947	17.1563
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0074463	34.9515	19.9029	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	25.3819	14.4536
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033113	43.738	26.975	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	26.6745	16.4512
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089602	45.1991	23.185	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	22.6792	11.6334
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089172	41.25	23.9583	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	23.2667	13.5135

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	90.3643	89.3067	mus_caroli	MGP_CAROLIEiJ_P0023133	98.9704	97.8121
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_cbaj	MGP_CBAJ_P0025151	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0025214	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_akrj	MGP_AKRJ_P0025398	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	99.8825	mus_musculus_casteij	MGP_CASTEiJ_P0024769	100	99.8825
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	95.6522	95.6522	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0025259	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	95.5347	95.5347	mus_musculus_fvbnj	MGP_FVBNJ_P0025257	99.8772	99.8772
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	99.53	99.0599	mus_spretus	MGP_SPRETEiJ_P0024278	99.4131	98.9437
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0024753	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_dba2j	MGP_DBA2J_P0025266	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0025405	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0025947	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_aj	MGP_AJ_P0025440	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	89.3067	87.3091	mus_pahari	MGP_PahariEiJ_P0086304	97.8121	95.6242
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	87.6616	85.6639	rattus_norvegicus	ENSRNOP00000063494	95.3964	93.2225
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus	ENSMUSP00000042691	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0025902	100	100
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	33.6075	24.9119	mus_musculus_pwkphj	MGP_PWKPhJ_P0024478	34.2926	25.4197
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	94.9471	93.6545	mus_spicilegus	ENSMSIP00000036566	99.5074	98.1527
MGP_129S1SvImJ_G0017302	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	100	100	mus_musculus_lpj	MGP_LPJ_P0025380	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression