RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_129S1SvImJ_G0016597	Gene ID		Accession	-
Symbol	Dhx9	Alias	-	Full Name	DEAH (Asp-Glu-Ala-His) box polypeptide 9
Status	Confidence	Length	33015 bases	Strand	Minus strand
Position	1 : 158279406 - 158312420	RNA binding domain	DEAD , dsrm , HA2 , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0022679	DEAD	PF00270	2.4e-06	1
MGP_129S1SvImJ_P0022679	dsrm	PF00035	3.3e-27	2
MGP_129S1SvImJ_P0022679	dsrm	PF00035	3.3e-27	3
MGP_129S1SvImJ_P0022675	DEAD	PF00270	7.7e-06	1
MGP_129S1SvImJ_P0022675	dsrm	PF00035	1.2e-26	2
MGP_129S1SvImJ_P0022675	dsrm	PF00035	1.2e-26	3
MGP_129S1SvImJ_P0022675	HA2	PF04408	7.1e-14	4
MGP_129S1SvImJ_P0022675	OB_NTP_bind	PF07717	7.4e-14	5
MGP_129S1SvImJ_P0022674	DEAD	PF00270	7.8e-06	1
MGP_129S1SvImJ_P0022674	dsrm	PF00035	1.2e-26	2
MGP_129S1SvImJ_P0022674	dsrm	PF00035	1.2e-26	3
MGP_129S1SvImJ_P0022674	HA2	PF04408	7.1e-14	4
MGP_129S1SvImJ_P0022674	OB_NTP_bind	PF07717	7.5e-14	5
MGP_129S1SvImJ_P0022676	DEAD	PF00270	7.8e-06	1
MGP_129S1SvImJ_P0022676	dsrm	PF00035	1.2e-26	2
MGP_129S1SvImJ_P0022676	dsrm	PF00035	1.2e-26	3
MGP_129S1SvImJ_P0022676	HA2	PF04408	7.1e-14	4
MGP_129S1SvImJ_P0022676	OB_NTP_bind	PF07717	7.5e-14	5
MGP_129S1SvImJ_P0022677	dsrm	PF00035	9.4e-28	1
MGP_129S1SvImJ_P0022677	dsrm	PF00035	9.4e-28	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Dhx9-001	MGP_129S1SvImJ_T0022674	4630	1384aa	MGP_129S1SvImJ_P0022674"/note="transcript_id=MGP_129S1SvImJ_T0022674
-	MGP_129S1SvImJ_T0022675	4561	1383aa	MGP_129S1SvImJ_P0022675"/note="transcript_id=MGP_129S1SvImJ_T0022675
-	MGP_129S1SvImJ_T0022676	4616	1384aa	MGP_129S1SvImJ_P0022676"/note="transcript_id=MGP_129S1SvImJ_T0022676
-	MGP_129S1SvImJ_T0022677	2406	459aa	MGP_129S1SvImJ_P0022677"/note="transcript_id=MGP_129S1SvImJ_T0022677
-	MGP_129S1SvImJ_T0022678	2018	46aa	MGP_129S1SvImJ_P0022678"/note="transcript_id=MGP_129S1SvImJ_T0022678
-	MGP_129S1SvImJ_T0022679	2346	735aa	MGP_129S1SvImJ_P0022679"/note="transcript_id=MGP_129S1SvImJ_T0022679
-	MGP_129S1SvImJ_T0022680	658	No protein	-
-	MGP_129S1SvImJ_T0022681	2658	No protein	-
-	MGP_129S1SvImJ_T0022682	2274	No protein	-
-	MGP_129S1SvImJ_T0022683	1604	No protein	-

Gene Model

Click here to download MGP_129S1SvImJ_G0016597's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0016597's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0038194	39.1209	23.0769	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	38.5838	22.7601
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0087230	41.2783	21.5712	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	22.3988	11.7052
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0048664	39.4813	24.8559	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	39.5954	24.9277
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0030416	45.702	27.2206	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	23.0491	13.7283
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0036060	32.4657	20.9689	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	32.4422	20.9538
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0058952	47.7952	28.734	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	24.2775	14.5954
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0074532	31.3043	17.6522	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	26.0116	14.6676
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0047505	35.4406	21.0728	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	26.7341	15.896
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0032616	31.9422	18.6998	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	28.7572	16.8353
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0071644	46.1635	25.283	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	26.5173	14.5231
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0081754	35.1965	22.1834	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	29.1185	18.3526
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0049617	37.1626	25.4671	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	38.8006	26.5896
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0094825	40.4742	24.4481	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	35.7659	21.604
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0061030	48.6513	31.4685	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	35.1879	22.7601
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090406	34.1205	19.7883	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	30.2746	17.5578
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0078248	41.6667	24.6914	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	9.75434	5.78035
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0031475	40.8216	23.4917	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	22.9769	13.2225
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027217	24.1155	12.2905	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	18.7139	9.53757

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	99.1329	99.1329	mus_caroli	MGP_CAROLIEiJ_P0020405	99.6369	99.6369
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_cbaj	MGP_CBAJ_P0022369	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	99.8555	99.8555	mus_musculus_c3hhej	MGP_C3HHeJ_P0022427	99.8555	99.8555
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_akrj	MGP_AKRJ_P0022616	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0021959	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0022468	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0022501	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	99.7832	99.7832	mus_spretus	MGP_SPRETEiJ_P0021467	99.7112	99.7112
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0021994	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_dba2j	MGP_DBA2J_P0022493	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0022616	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0023168	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_aj	MGP_AJ_P0022649	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	31.9364	31.9364	mus_pahari	MGP_PahariEiJ_P0075684	98.8814	98.8814
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	99.422	99.2775	rattus_norvegicus	ENSRNOP00000090956	98.8506	98.7069
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus	ENSMUSP00000038135	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0023132	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0021679	100	100
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	99.7832	99.7832	mus_spicilegus	ENSMSIP00000014810	99.7832	99.7832
MGP_129S1SvImJ_G0016597	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022676	100	100	mus_musculus_lpj	MGP_LPJ_P0022595	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression