RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_129S1SvImJ_G0016541	Gene ID		Accession	-
Symbol	Ddx59	Alias	-	Full Name	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
Status	Confidence	Length	25979 bases	Strand	Plus strand
Position	1 : 140245635 - 140271613	RNA binding domain	DEAD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0022397	DEAD	PF00270	4e-44	1
MGP_129S1SvImJ_P0022398	DEAD	PF00270	6e-44	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Ddx59-002	MGP_129S1SvImJ_T0022396	1364	No protein	-
-	MGP_129S1SvImJ_T0022397	2166	619aa	MGP_129S1SvImJ_P0022397"/note="transcript_id=MGP_129S1SvImJ_T0022397
-	MGP_129S1SvImJ_T0022398	2196	670aa	MGP_129S1SvImJ_P0022398"/note="transcript_id=MGP_129S1SvImJ_T0022398
-	MGP_129S1SvImJ_T0022399	304	No protein	-
-	MGP_129S1SvImJ_T0022400	508	No protein	-

Gene Model

Click here to download MGP_129S1SvImJ_G0016541's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0016541's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092049	42.9461	23.6515	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	33.441	18.4168
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073906	26.3158	16.3616	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	37.1567	23.1018
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	31.0627	16.3488	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	36.8336	19.3861
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0080594	46.3736	28.3516	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	34.0872	20.8401
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0035790	25.0277	12.7353	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	36.5105	18.5784
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0095689	36.1027	22.8097	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	38.6107	24.3942
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0024110	36.2121	22.8788	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	38.6107	24.3942
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0030028	50.5263	25.7895	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	31.0178	15.832
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033049	26.5877	16.8999	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	39.9031	25.3635
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037224	26.2597	15.8915	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	43.7803	26.4943
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0062999	25.4545	13.0909	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	33.9257	17.4475
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0041722	36.1963	21.4724	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	38.126	22.6171
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0047402	45.5607	25.7009	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	31.5024	17.7706
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090479	41.3223	22.314	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	24.2326	13.0856
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090482	41.7344	22.7642	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	24.8788	13.5703
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.7985	19.7802	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	30.6947	17.4475
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	28.9072	15.7462	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	39.7415	21.6478
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0078153	29.8611	12.5	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	6.94669	2.90792
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033934	51.5815	28.7105	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	34.2488	19.063
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0031316	42.3077	25.0836	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	40.8724	24.2326
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0034467	27.5676	15.4054	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	32.9564	18.4168
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0091690	42.7686	24.1736	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	33.441	18.9015
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0053595	30.7132	17.4672	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	34.0872	19.3861
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0059379	32.8947	18.9474	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	40.3877	23.2633
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0021795	31.9697	18.4848	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	34.0872	19.7092
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037213	42.1222	25.0804	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	42.3263	25.2019
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073292	32.0814	17.8404	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	33.1179	18.4168
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0093339	37.3065	21.3622	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	38.9338	22.294
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092358	25.1429	12.9143	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	35.5412	18.2553
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0043873	51.2255	26.4706	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	33.7641	17.4475
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0038189	34.6154	22.1154	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	40.7108	26.0097
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0083302	17.352	7.64803	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	34.0872	15.0242
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090310	40.1852	23.1481	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	35.0565	20.1939
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0042471	33.8217	19.6581	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	44.7496	26.0097
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0074463	31.2298	17.7994	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	31.1793	17.7706
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033113	44.316	26.2042	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	37.1567	21.9709
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089602	45.4333	25.0585	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	31.3409	17.2859
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089172	40.4167	25.2083	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	31.3409	19.5477

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	98.546	98.3845	mus_caroli	MGP_CAROLIEiJ_P0020135	99.187	99.0244
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_cbaj	MGP_CBAJ_P0022085	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_c3hhej	MGP_C3HHeJ_P0022146	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_akrj	MGP_AKRJ_P0022334	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.5154	mus_musculus_casteij	MGP_CASTEiJ_P0021676	99.8384	99.5154
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0022199	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_fvbnj	MGP_FVBNJ_P0022227	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.6769	mus_spretus	MGP_SPRETEiJ_P0021188	99.8384	99.6769
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_wsbeij	MGP_WSBEiJ_P0021721	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	100	100	mus_musculus_dba2j	MGP_DBA2J_P0022214	100	100
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_balbcj	MGP_BALBcJ_P0022338	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0022886	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_aj	MGP_AJ_P0022366	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	98.2229	97.0921	mus_pahari	MGP_PahariEiJ_P0075425	98.8618	97.7236
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	97.5767	93.3764	rattus_norvegicus	ENSRNOP00000047251	97.5767	93.3764
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus	ENSMUSP00000027655	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.8384	99.8384	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0022849	99.8384	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	99.6769	99.5154	mus_musculus_pwkphj	MGP_PWKPhJ_P0021408	99.6769	99.5154
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	100	99.8384	mus_spicilegus	ENSMSIP00000014636	100	99.8384
MGP_129S1SvImJ_G0016541	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	95.9612	95.9612	mus_musculus_lpj	MGP_LPJ_P0022315	99.3311	99.3311

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression