RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MD16G0036300	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	7147 bases	Strand	Plus strand
Position	16 : 2870638 - 2877784	RNA binding domain	tRNA_synt_1c_R2 , tRNA_synt_1c_R1 , tRNA-synt_1c , tRNA-synt_1c_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:MD16G0036300	tRNA_synt_1c_R2	PF04557	1.4e-06	1
mRNA:MD16G0036300	tRNA_synt_1c_R1	PF04558	1.9e-53	2
mRNA:MD16G0036300	tRNA-synt_1c	PF00749	2.6e-119	3
mRNA:MD16G0036300	tRNA-synt_1c_C	PF03950	1.7e-40	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:MD16G0036300	3066	799aa	mRNA:MD16G0036300

Gene Model

Click here to download MD16G0036300's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MD16G0036300's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD16G0036300

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD16G0036300

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression