RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MD16G0016300	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Cleavage and polyadenylation specificity factor subunit 3-II
Status	Confidence	Length	4558 bases	Strand	Plus strand
Position	16 : 1319817 - 1324374	RNA binding domain	Lactamase_B , Beta-Casp , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:MD16G0016300	Lactamase_B	PF00753	4.5e-11	1
mRNA:MD16G0016300	Beta-Casp	PF10996	1.5e-22	2
mRNA:MD16G0016300	RMMBL	PF07521	2.5e-14	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:MD16G0016300	2595	663aa	mRNA:MD16G0016300

Gene Model

Click here to download MD16G0016300's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MD16G0016300's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD16G0016300

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD16G0016300

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression