RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MD11G0052700	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2338 bases	Strand	Minus strand
Position	11 : 5407397 - 5409734	RNA binding domain	Ribosomal_S4e , KOW , RS4NT , S4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:MD11G0052700	Ribosomal_S4e	PF00900	8.6e-35	1
mRNA:MD11G0052700	KOW	PF00467	1.1e-06	2
mRNA:MD11G0052700	RS4NT	PF08071	1.3e-18	3
mRNA:MD11G0052700	S4	PF01479	2.9e-06	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:MD11G0052700	1299	264aa	mRNA:MD11G0052700

Gene Model

Click here to download MD11G0052700's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MD11G0052700's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD11G0052700

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD11G0052700

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression