RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MD10G0164900	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5987 bases	Strand	Plus strand
Position	10 : 29331813 - 29337799	RNA binding domain	PAM2 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:MD10G0164900	PAM2	PF07145	6e-05	1
mRNA:MD10G0164900	RRM_1	PF00076	2.5e-23	2
mRNA:MD10G0164900	RRM_1	PF00076	2.5e-23	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:MD10G0164900	1811	282aa	mRNA:MD10G0164900

Gene Model

Click here to download MD10G0164900's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MD10G0164900's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD10G0164900

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD10G0164900

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression