RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MD08G0197900	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3949 bases	Strand	Plus strand
Position	8 : 30530256 - 30534204	RNA binding domain	Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:MD08G0197900	Lactamase_B	PF00753	3.8e-09	1
mRNA:MD08G0197900	Beta-Casp	PF10996	1.5e-27	2
mRNA:MD08G0197900	CPSF73-100_C	PF11718	2.7e-46	3
mRNA:MD08G0197900	RMMBL	PF07521	5.6e-14	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:MD08G0197900	2396	666aa	mRNA:MD08G0197900

Gene Model

Click here to download MD08G0197900's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MD08G0197900's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD08G0197900

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD08G0197900

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression