RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MD05G0174500	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	6643 bases	Strand	Plus strand
Position	5 : 34064653 - 34071295	RNA binding domain	PAM2 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:MD05G0174500	PAM2	PF07145	0.00013	1
mRNA:MD05G0174500	RRM_1	PF00076	4.7e-23	2
mRNA:MD05G0174500	RRM_1	PF00076	4.7e-23	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:MD05G0174500	1694	296aa	mRNA:MD05G0174500

Gene Model

Click here to download MD05G0174500's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MD05G0174500's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD05G0174500

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MD05G0174500

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression