RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	LR48_Vigan785s001700	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	2922 bases	Strand	Minus strand
Position	KQ258536 : 143994 - 146915	RNA binding domain	zf-CCCH , RRM_1 , OST-HTH
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KOM29789	zf-CCCH	PF00642	4.8e-05	1
KOM29789	RRM_1	PF00076	1.2e-07	2
KOM29789	OST-HTH	PF12872	3.3e-12	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KOM29789	1482	493aa	KOM29789

Gene Model

Click here to download LR48_Vigan785s001700's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download LR48_Vigan785s001700's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan785s001700

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan785s001700

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression