RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	LR48_Vigan11g046400	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	1029 bases	Strand	Minus strand
Position	11 : 5963222 - 5964250	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KOM57431	RNA_pol_Rpb1_4	PF05000	1.4e-09	1
KOM57431	RNA_pol_Rpb1_5	PF04998	3.1e-41	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KOM57431	1029	342aa	KOM57431

Gene Model

Click here to download LR48_Vigan11g046400's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download LR48_Vigan11g046400's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan11g046400

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan11g046400

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression