RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	LR48_Vigan10g197500	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	13566 bases	Strand	Minus strand
Position	10 : 28811949 - 28825514	RNA binding domain	DNA_pol_A_exo1 , PMC2NT , HRDC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KOM56083	DNA_pol_A_exo1	PF01612	4.9e-40	1
KOM56083	PMC2NT	PF08066	2.1e-06	2
KOM56083	HRDC	PF00570	2.6e-09	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KOM56083	2823	940aa	KOM56083

Gene Model

Click here to download LR48_Vigan10g197500's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download LR48_Vigan10g197500's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan10g197500

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan10g197500

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression