RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	LR48_Vigan06g156900	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	1575 bases	Strand	Minus strand
Position	6 : 18951503 - 18953077	RNA binding domain	Ribosomal_S5_C , Ribosomal_S5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KOM46263	Ribosomal_S5_C	PF03719	3.8e-25	1
KOM46263	Ribosomal_S5	PF00333	6e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KOM46263	816	271aa	KOM46263

Gene Model

Click here to download LR48_Vigan06g156900's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download LR48_Vigan06g156900's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan06g156900

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
LR48_Vigan06g156900

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression