Description

Ensembl ID LPERR06G17460 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 20550 bases Strand Plus strand
Position 6 : 16086733 - 16107282 RNA binding domain RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
LPERR06G17460 RNA_pol_Rpb1_4 PF05000 1.7e-19 1
LPERR06G17460 RNA_pol_Rpb1_4 PF05000 3.5e-19 2
LPERR06G17460 RNA_pol_Rpb1_4 PF05000 3.6e-19 3
LPERR06G17460 RNA_pol_Rpb1_1 PF04997 2.4e-32 4
LPERR06G17460 RNA_pol_Rpb1_1 PF04997 2.4e-32 5
LPERR06G17460 RNA_pol_Rpb1_1 PF04997 2.5e-32 6
LPERR06G17460 RNA_pol_Rpb1_5 PF04998 3.3e-88 7
LPERR06G17460 RNA_pol_Rpb1_5 PF04998 3.5e-88 8
LPERR06G17460 RNA_pol_Rpb1_5 PF04998 8.2e-87 9
LPERR06G17460 RNA_pol_Rpb1_2 PF00623 2.6e-62 10
LPERR06G17460 RNA_pol_Rpb1_2 PF00623 4e-62 11
LPERR06G17460 RNA_pol_Rpb1_2 PF00623 4.2e-62 12
LPERR06G17460 RNA_pol_Rpb1_3 PF04983 7.7e-31 13
LPERR06G17460 RNA_pol_Rpb1_3 PF04983 7.4e-26 14
LPERR06G17460 RNA_pol_Rpb1_3 PF04983 7.5e-26 15

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- LPERR06G17460.1 5923 1850aa LPERR06G17460.1
- LPERR06G17460.2 5623 1799aa LPERR06G17460.2
- LPERR06G17460.3 5752 1793aa LPERR06G17460.3

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
LPERR06G17460

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
LPERR06G17460

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression