Description

Ensembl ID LPERR01G05590 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 15070 bases Strand Minus strand
Position 1 : 3894931 - 3910000 RNA binding domain RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
LPERR01G05590 RNA_pol_Rpb1_4 PF05000 2.1e-10 1
LPERR01G05590 RNA_pol_Rpb1_4 PF05000 2.2e-10 2
LPERR01G05590 RNA_pol_Rpb1_4 PF05000 2.3e-10 3
LPERR01G05590 RNA_pol_Rpb1_1 PF04997 9.2e-12 4
LPERR01G05590 RNA_pol_Rpb1_1 PF04997 9.7e-12 5
LPERR01G05590 RNA_pol_Rpb1_1 PF04997 1e-11 6
LPERR01G05590 RNA_pol_Rpb1_2 PF00623 1.5e-30 7
LPERR01G05590 RNA_pol_Rpb1_2 PF00623 1.6e-30 8
LPERR01G05590 RNA_pol_Rpb1_2 PF00623 1.6e-30 9
LPERR01G05590 RNA_pol_Rpb1_3 PF04983 8.4e-21 10
LPERR01G05590 RNA_pol_Rpb1_3 PF04983 8.8e-21 11
LPERR01G05590 RNA_pol_Rpb1_3 PF04983 9.3e-21 12

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- LPERR01G05590.1 4436 1477aa LPERR01G05590.1
- LPERR01G05590.2 4238 1411aa LPERR01G05590.2
- LPERR01G05590.3 4217 1404aa LPERR01G05590.3

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
LPERR01G05590

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
LPERR01G05590

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression