RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Jr16_02430	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	26028 bases	Strand	Plus strand
Position	16 : 2926037 - 2952064	RNA binding domain	IBN_N , CRM1_C , Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
cds	IBN_N	PF03810	7.2e-15	1
cds	CRM1_C	PF08767	3.6e-126	2
cds	Xpo1	PF08389	1.5e-40	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Jr16_02430_p1	3237	1078aa	cds.Jr16_02430_p1

Gene Model

Click here to download Jr16_02430's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Jr16_02430's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Jr16_02430

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Jr16_02430

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression