RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	HanXRQr2_Chr15g0678011	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	7070 bases	Strand	Minus strand
Position	15 : 11040363 - 11047432	RNA binding domain	HGTP_anticodon , tRNA_SAD , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:HanXRQr2_Chr15g0678011	HGTP_anticodon	PF03129	1.8e-19	1
mRNA:HanXRQr2_Chr15g0678011	tRNA_SAD	PF07973	1.8e-11	2
mRNA:HanXRQr2_Chr15g0678011	tRNA-synt_2b	PF00587	1.1e-37	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:HanXRQr2_Chr15g0678011	2365	674aa	mRNA:HanXRQr2_Chr15g0678011

Gene Model

Click here to download HanXRQr2_Chr15g0678011's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download HanXRQr2_Chr15g0678011's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
HanXRQr2_Chr15g0678011

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
HanXRQr2_Chr15g0678011

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression