RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	HanXRQr2_Chr14g0669571	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Cleavage and polyadenylation specificity factor subunit 2
Status	Confidence	Length	14122 bases	Strand	Plus strand
Position	14 : 171404857 - 171418978	RNA binding domain	Lactamase_B , Beta-Casp , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:HanXRQr2_Chr14g0669571	Lactamase_B	PF00753	1.8e-06	1
mRNA:HanXRQr2_Chr14g0669571	Beta-Casp	PF10996	5e-20	2
mRNA:HanXRQr2_Chr14g0669571	RMMBL	PF07521	3.6e-11	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:HanXRQr2_Chr14g0669571	2884	736aa	mRNA:HanXRQr2_Chr14g0669571

Gene Model

Click here to download HanXRQr2_Chr14g0669571's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download HanXRQr2_Chr14g0669571's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
HanXRQr2_Chr14g0669571

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
HanXRQr2_Chr14g0669571

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression