RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	HanXRQr2_Chr13g0584911	Gene ID		Accession	-
Symbol		Alias	-	Full Name	RNA polymerase sigma factor sigF, chloroplastic
Status	Confidence	Length	4769 bases	Strand	Plus strand
Position	13 : 81174418 - 81179186	RNA binding domain	Sigma70_r3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
mRNA:HanXRQr2_Chr13g0584911	Sigma70_r3	PF04539	1.5e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA:HanXRQr2_Chr13g0584911	2180	566aa	mRNA:HanXRQr2_Chr13g0584911

Gene Model

Click here to download HanXRQr2_Chr13g0584911's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download HanXRQr2_Chr13g0584911's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
HanXRQr2_Chr13g0584911

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
HanXRQr2_Chr13g0584911

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression