RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	GLYMA_05G118200	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	5020 bases	Strand	Plus strand
Position	5 : 31107219 - 31112238	RNA binding domain	PUF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KRH58284	PUF	PF00806	2.1e-66	1
KRH58284	PUF	PF00806	2.1e-66	2
KRH58284	PUF	PF00806	2.1e-66	3
KRH58284	PUF	PF00806	2.1e-66	4
KRH58284	PUF	PF00806	2.1e-66	5
KRH58284	PUF	PF00806	2.1e-66	6
KRH58284	PUF	PF00806	2.1e-66	7
KRH58284	PUF	PF00806	2.1e-66	8

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KRH58284	3165	775aa	KRH58284

Gene Model

Click here to download GLYMA_05G118200's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download GLYMA_05G118200's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
GLYMA_05G118200

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
GLYMA_05G118200

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression