RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	FRAEX38873_v2_000122930	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	8421 bases	Strand	Plus strand
Position	FTPI01002421.1 : 80379 - 88799	RNA binding domain	PheRS_DBD1 , PheRS_DBD3 , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
FRAEX38873_v2_000122930	PheRS_DBD1	PF18552	2e-08	1
FRAEX38873_v2_000122930	PheRS_DBD3	PF18553	2.5e-16	2
FRAEX38873_v2_000122930	tRNA-synt_2d	PF01409	8.3e-91	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	FRAEX38873_v2_000122930.1	1935	486aa	FRAEX38873_v2_000122930.1.cds

Gene Model

Click here to download FRAEX38873_v2_000122930's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download FRAEX38873_v2_000122930's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FRAEX38873_v2_000122930

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FRAEX38873_v2_000122930

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression