RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	FCD_00029919	Gene ID		Accession	-
Symbol		Alias	-	Full Name	aspartate--tRNA ligase, chloroplastic/mitochondrial
Status	Confidence	Length	5444 bases	Strand	Minus strand
Position	10 : 6275164 - 6280607	RNA binding domain	tRNA_anti-codon , tRNA-synt_2 , GAD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
FCD_00029919-RA:cds	tRNA_anti-codon	PF01336	2.9e-11	1
FCD_00029919-RA:cds	tRNA-synt_2	PF00152	1.6e-104	2
FCD_00029919-RA:cds	GAD	PF02938	3.8e-20	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	FCD_00029919-RA	2257	673aa	FCD_00029919-RA:cds

Gene Model

Click here to download FCD_00029919's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download FCD_00029919's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FCD_00029919

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FCD_00029919

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression