RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	FCD_00002373	Gene ID		Accession	-
Symbol		Alias	-	Full Name	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
Status	Confidence	Length	7187 bases	Strand	Minus strand
Position	3 : 14400084 - 14407270	RNA binding domain	Ribosomal_L23eN , Ribosomal_L23
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
FCD_00002373-RA:cds	Ribosomal_L23eN	PF03939	2.1e-17	1
FCD_00002373-RA:cds	Ribosomal_L23	PF00276	8.3e-13	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	FCD_00002373-RA	2681	706aa	FCD_00002373-RA:cds

Gene Model

Click here to download FCD_00002373's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download FCD_00002373's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FCD_00002373

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FCD_00002373

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression