RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	FBgn0052418	Gene ID	326214	Accession	-
Symbol	vito	Alias	CG10569;CG32418;DmelCG32418	Full Name	viriato
Status	Confidence	Length	1010 bases	Strand	Minus strand
Position	3L : 5776324 - 5777333	RNA binding domain	Nop25
Summary	Predicted to enable RNA binding activity. Involved in several processes, including eye-antennal disc development; nucleolus organization; and positive regulation of imaginal disc growth. Located in nucleolus. Is expressed in several structures, including embryonic/larval midgut; embryonic/larval midgut primordium; and imaginal disc. Orthologous to human NOL12 (nucleolar protein 12). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
FBpp0076825	Nop25	PF09805	1.3e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	FBtr0077119	951	264aa	FBpp0076825

Gene Model

Click here to download FBgn0052418's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download FBgn0052418's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FBgn0052418

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FBgn0052418

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005730	is_active_in nucleolus	2	IBA,IDA	Drosophila_melanogaster(7227)	Component
GO:0007000	involved_in nucleolus organization	1	IMP	Drosophila_melanogaster(7227)	Process
GO:0008284	involved_in positive regulation of cell population proliferation	1	IMP	Drosophila_melanogaster(7227)	Process
GO:0019843	enables rRNA binding	1	IBA	Drosophila_melanogaster(7227)	Function
GO:0030307	involved_in positive regulation of cell growth	1	IMP	Drosophila_melanogaster(7227)	Process
GO:0035214	involved_in eye-antennal disc development	1	IMP	Drosophila_melanogaster(7227)	Process
GO:0043066	involved_in negative regulation of apoptotic process	1	IMP	Drosophila_melanogaster(7227)	Process
GO:0045572	involved_in positive regulation of imaginal disc growth	1	IMP	Drosophila_melanogaster(7227)	Process

Expression