RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	FBgn0038964	Gene ID	42633	Accession	-
Symbol	Nop56	Alias	CG13849;DmelCG13849;DmNop56;Dnop56;nop56	Full Name	NA
Status	Confidence	Length	1974 bases	Strand	Minus strand
Position	3R : 22419095 - 22421068	RNA binding domain	Nop , NOP5NT
Summary	Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in several structures, including adult head; adult heart; and embryonic/larval optic lobe. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Orthologous to human NOP56 (NOP56 ribonucleoprotein). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
FBpp0083625	Nop	PF01798	2.9e-83	1
FBpp0083625	NOP5NT	PF08156	1e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	FBtr0084230	1746	496aa	FBpp0083625

Gene Model

Click here to download FBgn0038964's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download FBgn0038964's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FBgn0038964	drosophila_melanogaster	FBpp0075395	34.1317	16.9661	drosophila_melanogaster	FBpp0083625	34.4758	17.1371

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FBgn0038964	drosophila_melanogaster	FBpp0083625	77.621	63.1048	aquila_chrysaetos_chrysaetos	ENSACCP00020024568	72.3684	58.8346
FBgn0038964	drosophila_melanogaster	FBpp0083625	78.629	63.7097	lepisosteus_oculatus	ENSLOCP00000005859	66.3265	53.7415
FBgn0038964	drosophila_melanogaster	FBpp0083625	47.9839	33.871	cottoperca_gobio	ENSCGOP00000011547	48.7705	34.4262
FBgn0038964	drosophila_melanogaster	FBpp0083625	28.0242	11.6935	saccharomyces_cerevisiae	YGR091W	28.1377	11.7409

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0006364	involved_in rRNA processing	1	ISS	Drosophila_melanogaster(7227)	Process
GO:0030515	enables snoRNA binding	3	IBA,IEA,ISS	Drosophila_melanogaster(7227)	Function
GO:0031428	part_of box C/D RNP complex	2	IBA,IEA	Drosophila_melanogaster(7227)	Component
GO:0032040	part_of small-subunit processome	2	IBA,IEA	Drosophila_melanogaster(7227)	Component

Expression