RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	FBgn0003062	Gene ID	37662	Accession	-
Symbol	Fib	Alias	CG9888;dFib;DmelCG9888;fib;Fibri;fibrillarin;GCR-6;GCR6;pen59C5;Pen59C5	Full Name	Fibrillarin
Status	Confidence	Length	1817 bases	Strand	Minus strand
Position	2R : 23072909 - 23074725	RNA binding domain	Fibrillarin
Summary	Predicted to enable RNA binding activity; histone-glutamine methyltransferase activity; and rRNA methyltransferase activity. Predicted to be involved in box C/D RNA 3'-end processing; histone glutamine methylation; and rRNA methylation. Located in Cajal body and nucleolus. Is expressed in several structures, including embryonic/larval midgut; embryonic/larval muscle cell; extended germ band embryo; gonad; and visceral muscle primordium. Orthologous to several human genes including FBL (fibrillarin). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
FBpp0071892	Fibrillarin	PF01269	2.4e-108	1

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Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	FBtr0071982	1318	344aa	FBpp0071892

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Gene Model

Click here to download FBgn0003062's gene model file

Protein-Protein Interaction (PPI)

Click here to download FBgn0003062's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FBgn0003062	drosophila_melanogaster	FBpp0082153	49.5702	35.2436	drosophila_melanogaster	FBpp0071892	50.2907	35.7558

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Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
FBgn0003062	drosophila_melanogaster	FBpp0071892	78.4884	70.3488	caenorhabditis_elegans	T01C3.7.2	76.7045	68.75
FBgn0003062	drosophila_melanogaster	FBpp0071892	63.6628	59.3023	eptatretus_burgeri	ENSEBUP00000026110	90.8714	84.6473
FBgn0003062	drosophila_melanogaster	FBpp0071892	79.6512	74.4186	pseudonaja_textilis	ENSPTXP00000014295	75.4821	70.5234
FBgn0003062	drosophila_melanogaster	FBpp0071892	79.9419	74.7093	oncorhynchus_kisutch	ENSOKIP00005002345	85.4037	79.8137
FBgn0003062	drosophila_melanogaster	FBpp0071892	79.9419	74.7093	oncorhynchus_kisutch	ENSOKIP00005053918	85.6698	80.0623
FBgn0003062	drosophila_melanogaster	FBpp0071892	75	69.186	astyanax_mexicanus	ENSAMXP00000030387	72.4719	66.8539
FBgn0003062	drosophila_melanogaster	FBpp0071892	81.3953	76.1628	sphenodon_punctatus	ENSSPUP00000006174	88.0503	82.3899
FBgn0003062	drosophila_melanogaster	FBpp0071892	79.9419	75.5814	clupea_harengus	ENSCHAP00000033390	83.3333	78.7879
FBgn0003062	drosophila_melanogaster	FBpp0071892	78.7791	73.8372	poecilia_reticulata	ENSPREP00000026890	87.4194	81.9355
FBgn0003062	drosophila_melanogaster	FBpp0071892	79.9419	75.2907	notechis_scutatus	ENSNSUP00000019771	87.0253	81.962

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003723	enables RNA binding	2	IBA,IEA	Drosophila_melanogaster(7227)	Function
GO:0005730	is_active_in nucleolus	2	IBA,IDA	Drosophila_melanogaster(7227)	Component
GO:0015030	is_active_in Cajal body	2	IBA,IDA	Drosophila_melanogaster(7227)	Component
GO:0000494	involved_in box C/D RNA 3-end processing	1	IBA	Drosophila_melanogaster(7227)	Process
GO:0001651	located_in dense fibrillar component	1	ISS	Drosophila_melanogaster(7227)	Component
GO:0006364	involved_in rRNA processing	1	IEA	Drosophila_melanogaster(7227)	Process
GO:0008168	enables methyltransferase activity	1	IEA	Drosophila_melanogaster(7227)	Function
GO:0008649	enables rRNA methyltransferase activity	1	IBA	Drosophila_melanogaster(7227)	Function
GO:0031167	involved_in rRNA methylation	1	IBA	Drosophila_melanogaster(7227)	Process
GO:0031428	part_of box C/D RNP complex	1	IBA	Drosophila_melanogaster(7227)	Component

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs
Gene Ontology