RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSXETG00000032466	Gene ID		Accession	-
Symbol	rnaseh2c	Alias	-	Full Name	ribonuclease H2 subunit C
Status	Confidence	Length	25811 bases	Strand	Minus strand
Position	4 : 37924402 - 37950212	RNA binding domain	RNase_H2_suC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSXETP00000102616	RNase_H2_suC	PF08615	3.1e-16	1
ENSXETP00000111090	RNase_H2_suC	PF08615	3.1e-16	1
ENSXETP00000061146	RNase_H2_suC	PF08615	7.4e-16	1
ENSXETP00000103507	RNase_H2_suC	PF08615	7.5e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
rnaseh2c-202	ENSXETT00000065639	1194	173aa	ENSXETP00000061146
rnaseh2c-201	ENSXETT00000118183	1201	173aa	ENSXETP00000103507
rnaseh2c-203	ENSXETT00000121216	911	137aa	ENSXETP00000102616
rnaseh2c-204	ENSXETT00000111567	817	137aa	ENSXETP00000111090

Gene Model

Click here to download ENSXETG00000032466's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSXETG00000032466's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000032466

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	45.0867	33.526	eptatretus_burgeri	ENSEBUP00000024248	39	29
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.6012	39.3064	callorhinchus_milii	ENSCMIP00000009054	67.4074	50.3704
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	56.6474	39.3064	latimeria_chalumnae	ENSLACP00000011503	69.0141	47.8873
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	51.4451	36.9942	danio_rerio	ENSDARP00000123155	64.9635	46.7153
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	36.4162	carassius_auratus	ENSCARP00000050771	53.3742	38.6503
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.6012	35.8382	carassius_auratus	ENSCARP00000079496	49.7268	33.8798
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	37.5723	carassius_auratus	ENSCARP00000107222	64.2336	47.4453
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	36.4162	astyanax_mexicanus	ENSAMXP00000001231	65.1852	46.6667
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.0231	39.3064	ictalurus_punctatus	ENSIPUP00000026649	47.1204	35.6021
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	54.9133	40.4624	electrophorus_electricus	ENSEEEP00000035549	71.4286	52.6316
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	47.3988	35.8382	esox_lucius	ENSELUP00000006449	60.7407	45.9259
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	48.5549	35.8382	oncorhynchus_kisutch	ENSOKIP00005052999	55.6291	41.0596
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	51.4451	38.7283	oncorhynchus_mykiss	ENSOMYP00000011138	8.80317	6.6271
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	36.9942	26.0116	salmo_salar	ENSSSAP00000170706	53.3333	37.5
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	36.9942	salmo_salar	ENSSSAP00000003843	47.8022	35.1648
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	36.9942	salmo_trutta	ENSSTUP00000060429	59.3103	44.1379
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	37.5723	salmo_trutta	ENSSTUP00000010209	51.4793	38.4615
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	46.8208	34.104	gadus_morhua	ENSGMOP00000009331	54.7297	39.8649
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	53.1792	38.1503	poecilia_reticulata	ENSPREP00000022779	45.5446	32.6733
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	47.9769	35.2601	fundulus_heteroclitus	ENSFHEP00000022213	56.8493	41.7808
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.0231	38.1503	xiphophorus_maculatus	ENSXMAP00000003150	54.878	40.2439
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	35.2601	oryzias_latipes	ENSORLP00000042824	63.2353	44.8529
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	47.9769	36.4162	cyclopterus_lumpus	ENSCLMP00005016484	61.0294	46.3235
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	38.1503	oreochromis_niloticus	ENSONIP00000006712	64.7059	48.5294
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	38.7283	haplochromis_burtoni	ENSHBUP00000011189	64.7059	49.2647
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	37.5723	astatotilapia_calliptera	ENSACLP00000024935	63.9706	47.7941
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	48.5549	35.2601	sparus_aurata	ENSSAUP00010044454	59.5745	43.2624
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	35.8382	27.1676	lates_calcarifer	ENSLCAP00010043655	57.9439	43.9252
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	56.0694	42.7746	chrysemys_picta_bellii	ENSCPBP00000033474	69.7842	53.2374
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	35.8382	oryzias_melastigma	ENSOMEP00000016904	63.9706	45.5882
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.6012	40.4624	sphenodon_punctatus	ENSSPUP00000001053	59.8684	46.0526
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	36.9942	cottoperca_gobio	ENSCGOP00000029381	62.5	47.0588
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	35.8382	cyprinodon_variegatus	ENSCVAP00000005001	63.2353	45.5882
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	48.5549	34.6821	poecilia_latipinna	ENSPLAP00000031380	61.7647	44.1176
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	36.9942	hippocampus_comes	ENSHCOP00000005503	55.414	40.7643
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	37.5723	seriola_dumerili	ENSSDUP00000023771	62.5	47.7941
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	48.5549	35.2601	amphilophus_citrinellus	ENSACIP00000029006	60.4317	43.8849
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	36.9942	acanthochromis_polyacanthus	ENSAPOP00000010452	62.0438	46.7153
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	38.1503	maylandia_zebra	ENSMZEP00005006160	64.7059	48.5294
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	46.2428	36.4162	naja_naja	ENSNNAP00000007455	56.338	44.3662
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	37.5723	anabas_testudineus	ENSATEP00000055432	62.5	47.7941
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	51.4451	35.2601	larimichthys_crocea	ENSLCRP00005052096	56.3291	38.6076
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	47.9769	35.2601	myripristis_murdjan	ENSMMDP00005044020	61.4815	45.1852
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	47.3988	35.2601	nothobranchius_furzeri	ENSNFUP00015010772	62.5954	46.5649
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	55.4913	42.1965	chelonoidis_abingdonii	ENSCABP00000024106	70.073	53.2847
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	37.5723	amphiprion_ocellaris	ENSAOCP00000012403	63.2353	47.7941
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	35.2601	takifugu_rubripes	ENSTRUP00000064003	51.7857	36.3095
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	35.8382	mastacembelus_armatus	ENSMAMP00000044499	63.9706	45.5882
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	45.0867	35.8382	laticauda_laticaudata	ENSLLTP00000009667	54.9296	43.662
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	36.9942	denticeps_clupeoides	ENSDCDP00000038635	63.7681	46.3768
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	51.4451	36.9942	oryzias_javanicus	ENSOJAP00000027336	37.0833	26.6667
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	34.6821	labrus_bergylta	ENSLBEP00000007531	54.8387	38.7097
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	48.5549	36.4162	podarcis_muralis	ENSPMRP00000023302	52.8302	39.6226
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	38.1503	hucho_hucho	ENSHHUP00000090246	63.0435	47.8261
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	38.1503	sander_lucioperca	ENSSLUP00000038460	63.2353	48.5294
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	38.7283	pundamilia_nyererei	ENSPNYP00000019550	64.7059	49.2647
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	48.5549	36.4162	stegastes_partitus	ENSSPAP00000009883	61.7647	46.3235
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	45.6647	34.104	paramormyrops_kingsleyae	ENSPKIP00000000800	53.0201	39.5973
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	53.7572	38.7283	scophthalmus_maximus	ENSSMAP00000028949	46.0396	33.1683
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	37.5723	kryptolebias_marmoratus	ENSKMAP00000005516	63.2353	47.7941
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	55.4913	42.7746	terrapene_carolina_triunguis	ENSTMTP00000026238	69.0648	53.2374
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	47.9769	36.4162	oncorhynchus_tshawytscha	ENSOTSP00005074939	61.0294	46.3235
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	57.8035	42.1965	gopherus_evgoodei	ENSGEVP00005022133	47.619	34.7619
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	35.2601	scleropages_formosus	ENSSFOP00015046398	50.8876	36.0947
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	38.1503	seriola_lalandi_dorsalis	ENSSLDP00000020480	63.2353	48.5294
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	38.1503	betta_splendens	ENSBSLP00000044241	59.8639	44.898
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	36.9942	tetraodon_nigroviridis	ENSTNIP00000000579	62.5	47.0588
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.289	37.5723	amphiprion_percula	ENSAPEP00000013799	57.6159	43.0464
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	38.7283	neolamprologus_brichardi	ENSNBRP00000001796	64.7059	49.2647
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	38.1503	cynoglossus_semilaevis	ENSCSEP00000009091	62.3188	47.8261
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.0231	37.5723	cyprinus_carpio_carpio	ENSCCRP00000161329	65.2174	47.1014
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	37.5723	sinocyclocheilus_grahami	ENSSGRP00000039915	64.7059	47.7941
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	50.8671	36.9942	sinocyclocheilus_grahami	ENSSGRP00000041691	64.7059	47.0588
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	38.1503	erpetoichthys_calabaricus	ENSECRP00000001995	62.963	48.8889
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.711	35.2601	oryzias_sinensis	ENSOSIP00000042302	57.7181	40.9396
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	61.8497	48.5549	leptobrachium_leishanense	ENSLLEP00000015977	72.2973	56.7568
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	46.2428	36.4162	pseudonaja_textilis	ENSPTXP00000014959	56.338	44.3662
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	49.1329	35.2601	poecilia_formosa	ENSPFOP00000009389	62.5	44.8529
ENSXETG00000032466	xenopus_tropicalis	ENSXETP00000103507	52.6012	35.8382	pygocentrus_nattereri	ENSPNAP00000013189	64.539	43.9716

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression