RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSXETG00000031054	Gene ID		Accession	-
Symbol	noc2l	Alias	-	Full Name	NOC2-like nucleolar associated transcriptional repressor
Status	Confidence	Length	71227 bases	Strand	Plus strand
Position	7 : 88982270 - 89053496	RNA binding domain	Noc2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSXETP00000063655	Noc2	PF03715	1e-120	1
ENSXETP00000066856	Noc2	PF03715	1.2e-120	1
ENSXETP00000080451	Noc2	PF03715	5.7e-112	1
ENSXETP00000095929	Noc2	PF03715	9.6e-99	1
ENSXETP00000095929	Noc2	PF03715	9.6e-99	2
ENSXETP00000081778	Noc2	PF03715	1.9e-88	1
ENSXETP00000081778	Noc2	PF03715	1.9e-88	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
noc2l-201	ENSXETT00000090211	5795	783aa	ENSXETP00000066856
noc2l-202	ENSXETT00000060799	2307	739aa	ENSXETP00000063655
noc2l-203	ENSXETT00000076833	2777	743aa	ENSXETP00000095929
noc2l-204	ENSXETT00000102899	2765	739aa	ENSXETP00000080451
noc2l-205	ENSXETT00000066776	2663	705aa	ENSXETP00000081778

Gene Model

Click here to download ENSXETG00000031054's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSXETG00000031054's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000031054

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	10.728	7.02427	callorhinchus_milii	ENSCMIP00000005680	51.8519	33.9506
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	72.2861	59.7701	latimeria_chalumnae	ENSLACP00000019791	80.6268	66.6667
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	70.7535	55.3001	carassius_auratus	ENSCARP00000102956	72.799	56.8988
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	73.8186	59.8978	oncorhynchus_mykiss	ENSOMYP00000010811	75.5556	61.3072
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	71.5198	55.5556	gadus_morhua	ENSGMOP00000000681	70.7965	54.9937
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	73.5632	57.9821	sander_lucioperca	ENSSLUP00000004615	75.6899	59.6583
ENSXETG00000031054	xenopus_tropicalis	ENSXETP00000066856	74.0741	58.3653	stegastes_partitus	ENSSPAP00000016001	76.1155	59.9738

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression