RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSXETG00000020313	Gene ID		Accession	-
Symbol	tars3	Alias	-	Full Name	threonyl-tRNA synthetase 3
Status	Confidence	Length	33953 bases	Strand	Plus strand
Position	3 : 98083672 - 98117624	RNA binding domain	HGTP_anticodon , tRNA_SAD , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSXETP00000043847	HGTP_anticodon	PF03129	3.8e-18	1
ENSXETP00000043847	tRNA_SAD	PF07973	3.1e-11	2
ENSXETP00000043847	tRNA-synt_2b	PF00587	3.9e-36	3
ENSXETP00000082600	HGTP_anticodon	PF03129	6.7e-15	1
ENSXETP00000082600	tRNA_SAD	PF07973	3.1e-11	2
ENSXETP00000082600	tRNA-synt_2b	PF00587	3.9e-36	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
tars3-201	ENSXETT00000043847	2606	814aa	ENSXETP00000043847
tars3-202	ENSXETT00000081424	2600	812aa	ENSXETP00000082600

Gene Model

Click here to download ENSXETG00000020313's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSXETG00000020313's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000110441	36.0515	18.2403	xenopus_tropicalis	ENSXETP00000043847	20.6388	10.4423
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000069929	41.0112	24.7191	xenopus_tropicalis	ENSXETP00000043847	17.9361	10.8108
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000077067	73.7188	59.7897	xenopus_tropicalis	ENSXETP00000043847	68.9189	55.8968
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000066614	62.3288	50	xenopus_tropicalis	ENSXETP00000043847	11.1794	8.96806
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000021733	84.7434	75.5895	xenopus_tropicalis	ENSXETP00000043847	75.0614	66.9533

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	63.8821	54.914	ciona_intestinalis	ENSCINP00000008908	82.6709	71.0652
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.2211	69.4103	petromyzon_marinus	ENSPMAP00000005505	80.0245	69.2402
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	77.2727	66.8305	eptatretus_burgeri	ENSEBUP00000017573	81.2662	70.2842
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.941	74.0786	latimeria_chalumnae	ENSLACP00000021270	85.0765	76.9133
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	64.6192	53.6855	lepisosteus_oculatus	ENSLOCP00000017977	67.5225	56.0976
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.7125	70.516	clupea_harengus	ENSCHAP00000016446	80.4162	70.257
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	47.543	42.5061	danio_rerio	ENSDARP00000138354	89.3764	79.9076
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	73.4644	65.2334	carassius_auratus	ENSCARP00000057394	77.4611	68.7824
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.5897	70.3931	astyanax_mexicanus	ENSAMXP00000021476	76.6355	66.9393
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.5725	70.6388	ictalurus_punctatus	ENSIPUP00000015009	80.7786	69.9513
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.8354	70.2703	electrophorus_electricus	ENSEEEP00000006889	79.3727	68.9988
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.8354	70.1474	esox_lucius	ENSELUP00000030269	80.6373	69.9755
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.3096	71.3759	oncorhynchus_kisutch	ENSOKIP00005035456	81.1138	70.339
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.4324	71.2531	oncorhynchus_kisutch	ENSOKIP00005054611	81.1366	70.133
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.1867	70.8845	oncorhynchus_mykiss	ENSOMYP00000069416	80.8948	69.7703
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.801	71.6216	oncorhynchus_mykiss	ENSOMYP00000098148	81.2048	70.241
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	79.484	68.4275	salmo_salar	ENSSSAP00000093598	81.7952	70.4172
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	71.3759	salmo_salar	ENSSSAP00000099040	80.8664	69.9158
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.6781	71.4988	salmo_trutta	ENSSTUP00000032626	75.618	65.3933
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	78.1327	67.199	salmo_trutta	ENSSTUP00000062044	82.0645	70.5806
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.8354	70.0246	gadus_morhua	ENSGMOP00000060370	80.6373	69.8529
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	77.6413	67.5676	poecilia_reticulata	ENSPREP00000011963	81.1297	70.6033
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	79.8526	68.7961	fundulus_heteroclitus	ENSFHEP00000009164	62.9845	54.2636
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.0639	71.1302	xiphophorus_maculatus	ENSXMAP00000016731	82.0639	71.1302
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.4496	70.7617	oryzias_latipes	ENSORLP00000017952	81.6502	70.936
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	59.3366	52.3342	cyclopterus_lumpus	ENSCLMP00005001344	87.1841	76.8953
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.3268	70.3931	oreochromis_niloticus	ENSONIP00000077600	79.759	69.0361
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.1867	71.0074	haplochromis_burtoni	ENSHBUP00000018833	82.1867	71.0074
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	70.8845	astatotilapia_calliptera	ENSACLP00000027394	82.5553	70.8845
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.6781	71.8673	sparus_aurata	ENSSAUP00010056034	82.7798	71.9557
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.801	71.8673	lates_calcarifer	ENSLCAP00010059044	82.9028	71.9557
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	79.7297	70.0246	notechis_scutatus	ENSNSUP00000026521	81.3283	71.4286
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.3096	70.8845	oryzias_melastigma	ENSOMEP00000015536	82.6141	71.1467
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	29.6069	25.5528	sphenodon_punctatus	ENSSPUP00000001945	73.0303	63.0303
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.941	71.1302	dicentrarchus_labrax	ENSDLAP00005057382	77.8296	67.5613
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	11.7936	8.96806	cottoperca_gobio	ENSCGOP00000032885	70.5882	53.6765
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	47.7887	43.3661	cottoperca_gobio	ENSCGOP00000033007	89.8383	81.5242
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	47.7887	43.3661	cottoperca_gobio	ENSCGOP00000032877	89.8383	81.5242
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.6781	71.6216	cyprinodon_variegatus	ENSCVAP00000025076	83.8107	72.6027
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.6953	71.1302	poecilia_latipinna	ENSPLAP00000008551	81.6953	71.1302
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	75.43	66.4619	hippocampus_comes	ENSHCOP00000017521	85.3964	75.2434
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.4324	71.8673	seriola_dumerili	ENSSDUP00000010245	82.5338	71.9557
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	75.7985	67.199	amphilophus_citrinellus	ENSACIP00000006646	88.0171	78.0314
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	62.7764	57.0025	acanthochromis_polyacanthus	ENSAPOP00000018376	90.6028	82.2695
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	71.0074	maylandia_zebra	ENSMZEP00005007500	82.5553	71.0074
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	79.8526	70.516	naja_naja	ENSNNAP00000007895	83.4403	73.6842
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	71.6216	anabas_testudineus	ENSATEP00000005783	82.8607	71.8866
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	83.0467	71.7445	larimichthys_crocea	ENSLCRP00005026868	82.8431	71.5686
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.0811	71.3759	myripristis_murdjan	ENSMMDP00005043456	81.1808	71.4637
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.941	71.0074	nothobranchius_furzeri	ENSNFUP00015049182	82.0418	71.0947
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.4324	71.0074	amphiprion_ocellaris	ENSAOCP00000023269	82.5338	71.0947
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.4668	68.5504	takifugu_rubripes	ENSTRUP00000007981	81.3665	69.3168
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.3096	71.9902	mastacembelus_armatus	ENSMAMP00000007787	81.6078	71.3764
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	75.7985	65.602	denticeps_clupeoides	ENSDCDP00000055418	85.3389	73.8589
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.2039	69.656	denticeps_clupeoides	ENSDCDP00000057454	82.5219	70.7865
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.3096	71.2531	oryzias_javanicus	ENSOJAP00000010930	82.6141	71.5166
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	69.5332	61.5479	labrus_bergylta	ENSLBEP00000023801	89.1339	78.8976
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.5725	71.0074	labrus_bergylta	ENSLBEP00000024260	81.2729	70.7466
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	7.73956	6.38821	hucho_hucho	ENSHHUP00000003921	55.2632	45.614
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	70.8845	hucho_hucho	ENSHHUP00000047205	80.5755	69.1847
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	70.7617	hucho_hucho	ENSHHUP00000011192	80.1909	68.7351
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.8354	69.9017	sander_lucioperca	ENSSLUP00000033593	82.6633	71.4824
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	71.7445	63.2678	pundamilia_nyererei	ENSPNYP00000012924	89.4334	78.8668
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.3096	70.8845	stegastes_partitus	ENSSPAP00000027138	82.6141	71.1467
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.9582	69.0418	paramormyrops_kingsleyae	ENSPKIP00000001925	81.6605	69.6406
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	78.3784	68.7961	scophthalmus_maximus	ENSSMAP00000047848	80.9645	71.066
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.0639	71.1302	kryptolebias_marmoratus	ENSKMAP00000002310	81.8627	70.9559
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.3096	71.0074	oncorhynchus_tshawytscha	ENSOTSP00005029322	81.0157	69.8912
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.5553	71.7445	oncorhynchus_tshawytscha	ENSOTSP00005027687	81.2576	70.6167
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	75.0614	66.7076	gasterosteus_aculeatus	ENSGACP00000019326	84.1598	74.7934
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.6953	70.1474	scleropages_formosus	ENSSFOP00015026586	76.6129	65.7834
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.4324	71.9902	seriola_lalandi_dorsalis	ENSSLDP00000021232	82.5338	72.0787
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.7125	70.1474	betta_splendens	ENSBSLP00000032264	81.2114	70.581
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	18.5504	15.2334	tetraodon_nigroviridis	ENSTNIP00000004523	78.2383	64.2487
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	77.7641	66.8305	tetraodon_nigroviridis	ENSTNIP00000014887	79.125	68
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	82.4324	71.1302	amphiprion_percula	ENSAPEP00000011213	82.5338	71.2177
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	46.8059	39.5577	neolamprologus_brichardi	ENSNBRP00000010352	79.375	67.0833
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.3268	70.7617	cynoglossus_semilaevis	ENSCSEP00000017371	81.4268	70.8487
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.5897	70.0246	cyprinus_carpio_carpio	ENSCCRP00000116822	82.1026	71.3392
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	80.5897	71.0074	cyprinus_carpio_carpio	ENSCCRP00000085847	80.2938	70.7466
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	76.6585	67.0762	sinocyclocheilus_grahami	ENSSGRP00000045222	80	70
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	40.9091	35.0123	erpetoichthys_calabaricus	ENSECRP00000033134	84.7328	72.5191
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	78.5012	67.6904	oryzias_sinensis	ENSOSIP00000049074	77.0808	66.4656
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	89.1892	82.0639	leptobrachium_leishanense	ENSLLEP00000007829	89.5191	82.3674
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.6953	71.1302	poecilia_formosa	ENSPFOP00000014158	81.5951	71.0429
ENSXETG00000020313	xenopus_tropicalis	ENSXETP00000043847	81.3268	71.2531	pygocentrus_nattereri	ENSPNAP00000009846	80.1453	70.2179

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression