RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSXETG00000018640	Gene ID		Accession	-
Symbol	tars2	Alias	-	Full Name	threonyl-tRNA synthetase 2, mitochondrial
Status	Confidence	Length	42978 bases	Strand	Minus strand
Position	8 : 127601224 - 127644201	RNA binding domain	HGTP_anticodon , tRNA_SAD , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSXETP00000077089	HGTP_anticodon	PF03129	1.1e-18	1
ENSXETP00000077089	tRNA_SAD	PF07973	2.9e-11	2
ENSXETP00000077089	tRNA-synt_2b	PF00587	7.1e-35	3
ENSXETP00000077067	HGTP_anticodon	PF03129	1.2e-18	1
ENSXETP00000077067	tRNA_SAD	PF07973	1.1e-09	2
ENSXETP00000077067	tRNA-synt_2b	PF00587	7.9e-35	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
tars2-202	ENSXETT00000071302	2950	715aa	ENSXETP00000077089
tars2-201	ENSXETT00000081094	2544	761aa	ENSXETP00000077067

Gene Model

Click here to download ENSXETG00000018640's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSXETG00000018640's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000110441	37.1245	20.1717	xenopus_tropicalis	ENSXETP00000077067	22.7332	12.3522
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000069929	36.7978	23.3146	xenopus_tropicalis	ENSXETP00000077067	17.2142	10.9067
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000043847	68.9189	55.8968	xenopus_tropicalis	ENSXETP00000077067	73.7188	59.7897
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000066614	62.3288	43.8356	xenopus_tropicalis	ENSXETP00000077067	11.9579	8.40999
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000021733	77.5312	62.2746	xenopus_tropicalis	ENSXETP00000077067	73.456	59.0013

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	63.3377	50.1971	ciona_intestinalis	ENSCINP00000008908	76.6296	60.7313
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	74.5072	59.7897	petromyzon_marinus	ENSPMAP00000005505	69.4853	55.7598
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	74.77	60.841	eptatretus_burgeri	ENSEBUP00000017573	73.5142	59.8191
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	63.4691	50.1971	latimeria_chalumnae	ENSLACP00000009891	69.5965	55.0432
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	73.7188	62.4179	chrysemys_picta_bellii	ENSCPBP00000010762	78.7921	66.7135
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	60.5782	50.3285	sphenodon_punctatus	ENSSPUP00000000933	70.3817	58.4733
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	72.5361	61.2352	chelonoidis_abingdonii	ENSCABP00000014521	72.2513	60.9948
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	10.6439	9.46124	hucho_hucho	ENSHHUP00000019936	87.0968	77.4194
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	73.3246	61.6294	terrapene_carolina_triunguis	ENSTMTP00000008708	68.974	57.9728
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	72.0105	60.184	pelodiscus_sinensis	ENSPSIP00000017599	83.6641	69.9237
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	73.8502	61.2352	gopherus_evgoodei	ENSGEVP00005020659	80.1712	66.4765
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	37.5821	32.0631	erpetoichthys_calabaricus	ENSECRP00000011607	86.1446	73.494
ENSXETG00000018640	xenopus_tropicalis	ENSXETP00000077067	76.6097	67.6741	leptobrachium_leishanense	ENSLLEP00000043309	85.9882	75.9587

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression