RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSXETG00000010729	Gene ID		Accession	-
Symbol	rps3	Alias	-	Full Name	ribosomal protein S3
Status	Confidence	Length	9914 bases	Strand	Minus strand
Position	2 : 172175874 - 172185787	RNA binding domain	KH_2 , Ribosomal_S3_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSXETP00000097937	KH_2	PF07650	1.7e-11	1
ENSXETP00000068728	KH_2	PF07650	3.3e-11	1
ENSXETP00000068728	Ribosomal_S3_C	PF00189	2.4e-23	2
ENSXETP00000023473	KH_2	PF07650	3.7e-11	1
ENSXETP00000023473	Ribosomal_S3_C	PF00189	2.4e-23	2
ENSXETP00000099523	KH_2	PF07650	4.1e-11	1
ENSXETP00000099523	Ribosomal_S3_C	PF00189	2.8e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
rps3-202	ENSXETT00000094311	968	256aa	ENSXETP00000099523
rps3-201	ENSXETT00000072550	820	245aa	ENSXETP00000068728
rps3-203	ENSXETT00000023473	865	246aa	ENSXETP00000023473
rps3-204	ENSXETT00000087585	462	151aa	ENSXETP00000097937

Gene Model

Click here to download ENSXETG00000010729's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSXETG00000010729's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000010729

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	78.9062	69.9219	caenorhabditis_elegans	C23G10.3.1	81.7814	72.4696
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	81.6406	74.6094	drosophila_melanogaster	FBpp0312066	84.9594	77.6423
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	81.6406	78.125	ciona_intestinalis	ENSCINP00000010313	79.4677	76.0456
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	73.8281	69.5312	petromyzon_marinus	ENSPMAP00000008596	94.5	89
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	55.0781	50	eptatretus_burgeri	ENSEBUP00000005415	77.9006	70.7182
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.2344	callorhinchus_milii	ENSCMIP00000043843	94	92.4
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	88.6719	87.1094	latimeria_chalumnae	ENSLACP00000006908	89.3701	87.7953
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	90.625	89.0625	clupea_harengus	ENSCHAP00000032981	91.6996	90.1186
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.2344	danio_rerio	ENSDARP00000153775	96.3265	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	90.2344	88.2812	carassius_auratus	ENSCARP00000026153	89.8833	87.9377
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.625	astyanax_mexicanus	ENSAMXP00000014035	96.3265	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.625	ictalurus_punctatus	ENSIPUP00000008346	96.3265	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	89.4531	gadus_morhua	ENSGMOP00000000845	94.7154	93.0894
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	poecilia_reticulata	ENSPREP00000025968	95.102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	xiphophorus_maculatus	ENSXMAP00000024932	95.102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.4062	90.2344	oryzias_latipes	ENSORLP00000000748	95.5102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	89.8438	cyclopterus_lumpus	ENSCLMP00005012497	95.102	93.8775
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.9688	91.7969	haplochromis_burtoni	ENSHBUP00000001180	86.8613	85.7664
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.9688	91.7969	astatotilapia_calliptera	ENSACLP00000020299	85.9206	84.8375
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	89.8438	sparus_aurata	ENSSAUP00010011575	95.102	93.8775
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.4531	lates_calcarifer	ENSLCAP00010027748	94.3775	91.9679
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.4531	lates_calcarifer	ENSLCAP00010019371	94.3775	91.9679
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	89.0625	sarcophilus_harrisii	ENSSHAP00000028604	91.0156	89.0625
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.9688	91.7969	crocodylus_porosus	ENSCPRP00005025112	97.9424	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.4062	91.0156	serinus_canaria	ENSSCAP00000000208	95.1219	94.7154
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	89.8438	macaca_nemestrina	ENSMNEP00000016018	83.0986	80.9859
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	parus_major	ENSPMJP00000001306	86.1818	85.4545
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	75.7812	73.8281	chrysemys_picta_bellii	ENSCPBP00000040238	90.2326	87.907
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	42.1875	41.0156	chrysemys_picta_bellii	ENSCPBP00000033328	81.203	78.9474
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	89.8438	macaca_fascicularis	ENSMFAP00000056565	83.0986	80.9859
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	93.3594	91.4062	ornithorhynchus_anatinus	ENSOANP00000046763	77.5974	75.974
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.2344	ailuropoda_melanoleuca	ENSAMEP00000026974	93.6508	91.6667
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	ursus_maritimus	ENSUMAP00000014686	95.102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	gallus_gallus	ENSGALP00010004125	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	39.8438	33.5938	vulpes_vulpes	ENSVVUP00000021885	75.5556	63.7037
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	62.8906	61.7188	oryzias_melastigma	ENSOMEP00000018872	88.9503	87.2928
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	90.2344	89.4531	sphenodon_punctatus	ENSSPUP00000022389	99.1416	98.2833
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	37.1094	35.5469	microcebus_murinus	ENSMICP00000050283	95.9596	91.9192
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	90.625	89.8438	dicentrarchus_labrax	ENSDLAP00005012215	94.3089	93.4959
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.2344	cottoperca_gobio	ENSCGOP00000019138	96.3265	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.4062	90.2344	cyprinodon_variegatus	ENSCVAP00000024876	95.5102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	poecilia_latipinna	ENSPLAP00000021913	95.102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	hippocampus_comes	ENSHCOP00000003692	94.332	93.5223
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	anolis_carolinensis	ENSACAP00000029870	82.6241	81.9149
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.2344	seriola_dumerili	ENSSDUP00000005877	95.9184	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	37.5	33.9844	jaculus_jaculus	ENSJJAP00000016511	89.7196	81.3084
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	89.8438	rattus_norvegicus	ENSRNOP00000023935	96.3265	93.8775
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.4062	coturnix_japonica	ENSCJPP00005006232	97.9339	96.6942
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	73.0469	71.0938	nomascus_leucogenys	ENSNLEP00000047898	98.4211	95.7895
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	91.0156	amphilophus_citrinellus	ENSACIP00000030409	95.9184	95.102
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.9688	91.7969	maylandia_zebra	ENSMZEP00005033090	85.9206	84.8375
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	39.8438	35.1562	dasypus_novemcinctus	ENSDNOP00000032658	76.6917	67.6692
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.8438	anabas_testudineus	ENSATEP00000004991	94	92
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	81.6406	78.125	ciona_savignyi	ENSCSAVP00000005843	81.323	77.821
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	43.75	41.7969	bos_mutus	ENSBMUP00000026521	97.3913	93.0435
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	anas_platyrhynchos_platyrhynchos	ENSAPLP00000014372	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	89.4531	88.6719	larimichthys_crocea	ENSLCRP00005007718	92.7125	91.9028
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	90.625	myripristis_murdjan	ENSMMDP00005010351	86.1818	84.3636
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	39.0625	37.1094	chelonoidis_abingdonii	ENSCABP00000007145	80	76
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	86.3281	85.9375	chelonoidis_abingdonii	ENSCABP00000019574	99.1031	98.6547
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.625	amphiprion_ocellaris	ENSAOCP00000009508	95.9184	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	84.375	83.2031	takifugu_rubripes	ENSTRUP00000065252	86.4	85.2
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.625	mastacembelus_armatus	ENSMAMP00000039486	94.4	92.8
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	71.875	60.5469	saccharomyces_cerevisiae	YNL178W	76.6667	64.5833
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	89.8438	denticeps_clupeoides	ENSDCDP00000050154	84.0426	81.5603
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.4062	90.2344	oryzias_javanicus	ENSOJAP00000048705	93.6	92.4
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.625	labrus_bergylta	ENSLBEP00000027781	95.9184	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	93.3594	92.5781	ficedula_albicollis	ENSFALP00000008301	69.6793	69.0962
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	anser_brachyrhynchus	ENSABRP00000017442	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	aquila_chrysaetos_chrysaetos	ENSACCP00020015068	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	90.625	90.2344	struthio_camelus_australis	ENSSCUP00000012133	99.5708	99.1416
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	80.8594	76.9531	geospiza_fortis	ENSGFOP00000002947	83.8057	79.7571
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.4062	salvator_merianae	ENSSMRP00000008585	97.5309	96.2963
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	strigops_habroptila	ENSSHBP00005023390	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.4062	90.2344	sander_lucioperca	ENSSLUP00000042619	95.5102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.625	pundamilia_nyererei	ENSPNYP00000009784	95.9184	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	91.0156	stegastes_partitus	ENSSPAP00000029604	96.3265	95.102
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	87.8906	paramormyrops_kingsleyae	ENSPKIP00000008644	89.272	86.2069
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.2344	scophthalmus_maximus	ENSSMAP00000056221	95.5285	93.9024
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	69.5312	66.7969	mus_spicilegus	ENSMSIP00000008869	83.9623	80.6604
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.625	kryptolebias_marmoratus	ENSKMAP00000013000	95.9184	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	terrapene_carolina_triunguis	ENSTMTP00000002545	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	42.5781	41.4062	terrapene_carolina_triunguis	ENSTMTP00000015252	81.9549	79.6992
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	pelodiscus_sinensis	ENSPSIP00000009770	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.4062	90.2344	gasterosteus_aculeatus	ENSGACP00000017707	95.5102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.7969	gopherus_evgoodei	ENSGEVP00005000217	97.5309	96.7078
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	42.5781	40.625	gopherus_evgoodei	ENSGEVP00005015409	93.1624	88.8889
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.4531	scleropages_formosus	ENSSFOP00015003518	94	91.6
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.2344	seriola_lalandi_dorsalis	ENSSLDP00000023121	95.9184	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.8438	betta_splendens	ENSBSLP00000020362	94	92
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.625	amphiprion_percula	ENSAPEP00000032116	95.9184	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.625	neolamprologus_brichardi	ENSNBRP00000008007	95.9184	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	90.2344	cynoglossus_semilaevis	ENSCSEP00000022665	95.9184	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	88.2812	85.5469	cyprinus_carpio_carpio	ENSCCRP00000110119	88.9764	86.2205
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.4531	cyprinus_carpio_carpio	ENSCCRP00000034085	94	91.6
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	90.625	88.2812	sinocyclocheilus_grahami	ENSSGRP00000091864	89.9225	87.5969
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.7969	89.4531	erpetoichthys_calabaricus	ENSECRP00000002828	94.3775	91.9679
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.5781	91.4062	oryzias_sinensis	ENSOSIP00000018310	86.8132	85.7143
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	85.5469	81.25	saimiri_boliviensis_boliviensis	ENSSBOP00000009876	87.251	82.8685
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	poecilia_formosa	ENSPFOP00000013876	95.102	94.2857
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	92.1875	90.625	pygocentrus_nattereri	ENSPNAP00000031346	96.3265	94.6939
ENSXETG00000010729	xenopus_tropicalis	ENSXETP00000099523	91.0156	90.2344	ictidomys_tridecemlineatus	ENSSTOP00000024446	95.4918	94.6721

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression