Description

Ensembl ID ENSXETG00000006635 Gene ID Accession -
Symbol pabpc1 Alias - Full Name poly(A) binding protein, cytoplasmic 1
Status Confidence Length 13994 bases Strand Plus strand
Position 6 : 130790463 - 130804456 RNA binding domain PABP , RRM_5 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSXETP00000033285 PABP PF00658 6.2e-31 1
ENSXETP00000033285 RRM_1 PF00076 1.7e-83 2
ENSXETP00000033285 RRM_1 PF00076 1.7e-83 3
ENSXETP00000033285 RRM_1 PF00076 1.7e-83 4
ENSXETP00000033285 RRM_1 PF00076 1.7e-83 5
ENSXETP00000014537 PABP PF00658 6.3e-31 1
ENSXETP00000014537 RRM_5 PF13893 6.6e-08 2
ENSXETP00000014537 RRM_5 PF13893 6.6e-08 3
ENSXETP00000014537 RRM_1 PF00076 9.4e-90 4
ENSXETP00000014537 RRM_1 PF00076 9.4e-90 5
ENSXETP00000014537 RRM_1 PF00076 9.4e-90 6
ENSXETP00000014537 RRM_1 PF00076 9.4e-90 7
ENSXETP00000056914 RRM_1 PF00076 1.5e-47 1
ENSXETP00000056914 RRM_1 PF00076 1.5e-47 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
pabpc1-201 ENSXETT00000056914 1030 214aa ENSXETP00000056914
pabpc1-202 ENSXETT00000014537 2684 634aa ENSXETP00000014537
pabpc1-203 ENSXETT00000033285 2546 588aa ENSXETP00000033285

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSXETG00000006635xenopus_tropicalisENSXETP0000007258162.184951.2605xenopus_tropicalisENSXETP0000001453723.343819.2429
ENSXETG00000006635xenopus_tropicalisENSXETP0000010203240.639326.484xenopus_tropicalisENSXETP0000001453714.03799.14826
ENSXETG00000006635xenopus_tropicalisENSXETP0000003282032.631614.5263xenopus_tropicalisENSXETP0000001453724.44810.8833
ENSXETG00000006635xenopus_tropicalisENSXETP0000006723936.744219.7674xenopus_tropicalisENSXETP0000001453724.921113.4069
ENSXETG00000006635xenopus_tropicalisENSXETP0000009069747.174425.3071xenopus_tropicalisENSXETP0000001453730.283916.2461
ENSXETG00000006635xenopus_tropicalisENSXETP0000011099745.215326.7943xenopus_tropicalisENSXETP0000001453729.810717.6656
ENSXETG00000006635xenopus_tropicalisENSXETP0000002392786.783479.1401xenopus_tropicalisENSXETP0000001453785.962178.3912
ENSXETG00000006635xenopus_tropicalisENSXETP0000007744940.425521.5426xenopus_tropicalisENSXETP0000001453723.974812.776
ENSXETG00000006635xenopus_tropicalisENSXETP0000001545232.116819.8905xenopus_tropicalisENSXETP0000001453727.760317.1924
ENSXETG00000006635xenopus_tropicalisENSXETP0000008704831.645619.462xenopus_tropicalisENSXETP0000001453731.545719.4006
ENSXETG00000006635xenopus_tropicalisENSXETP0000004938280.930270.5426xenopus_tropicalisENSXETP0000001453782.334471.7666
ENSXETG00000006635xenopus_tropicalisENSXETP0000005306942.035425.6637xenopus_tropicalisENSXETP0000001453714.98429.14826
ENSXETG00000006635xenopus_tropicalisENSXETP0000005909632.59817.8922xenopus_tropicalisENSXETP0000001453720.977911.5142
ENSXETG00000006635xenopus_tropicalisENSXETP0000009962134.963317.1149xenopus_tropicalisENSXETP0000001453722.555211.041
ENSXETG00000006635xenopus_tropicalisENSXETP0000011947129.611714.8058xenopus_tropicalisENSXETP0000001453719.24299.62145
ENSXETG00000006635xenopus_tropicalisENSXETP0000001920440.178622.3214xenopus_tropicalisENSXETP0000001453721.293411.8297
ENSXETG00000006635xenopus_tropicalisENSXETP0000002068140.359922.108xenopus_tropicalisENSXETP0000001453724.763413.5647
ENSXETG00000006635xenopus_tropicalisENSXETP0000010353826.112815.1335xenopus_tropicalisENSXETP0000001453713.88018.04416
ENSXETG00000006635xenopus_tropicalisENSXETP0000011263323.931611.3248xenopus_tropicalisENSXETP0000001453717.66568.35962
ENSXETG00000006635xenopus_tropicalisENSXETP0000008759339.451521.9409xenopus_tropicalisENSXETP0000001453729.495316.4038

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453793.217790.0631callorhinchus_miliiENSCMIP0000003325893.512790.3481
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.5836latimeria_chalumnaeENSLACP0000000494492.51590.7186
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453795.741392.5868lepisosteus_oculatusENSLOCP0000001183394.843891.7188
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453793.690889.5899clupea_harengusENSCHAP0000002506492.812588.75
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453793.533188.1703astyanax_mexicanusENSAMXP0000005092593.533188.1703
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453778.864472.082electrophorus_electricusENSEEEP0000003018290.579782.7899
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453770.504764.9842esox_luciusENSELUP0000004617487.304780.4688
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453793.217789.7476lates_calcariferENSLCAP0001003042794.863691.3323
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.003295.2681notechis_scutatusENSNSUP0000001692196.850495.1181
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.318695.4259sarcophilus_harrisiiENSSHAP0000003732897.318695.4259
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453787.539485.3312serinus_canariaENSSCAP0000000552596.521794.087
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453787.697285.6467mus_caroliMGP_CAROLIEiJ_P003806796.695794.4348
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.1104chrysemys_picta_belliiENSCPBP0000000732397.630395.2607
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.5836mus_spretusMGP_SPRETEiJ_P003984897.32795.283
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.003295.4259ornithorhynchus_anatinusENSOANP0000001163396.698195.1258
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453732.965332.0189ailuropoda_melanoleucaENSAMEP0000003627398.584995.7547
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.160995.2681monodelphis_domesticaENSMODP0000000771797.314495.4186
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.5836mus_musculusENSMUSP0000000180997.32795.283
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.4259gallus_gallusENSGALP0001001554991.703789.6296
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.4259sphenodon_punctatusENSSPUP0000002384297.169895.1258
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.7413dipodomys_ordiiENSDORP0000001310097.32795.4403
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.4259anolis_carolinensisENSACAP0000001628697.169895.1258
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.4259rattus_norvegicusENSRNOP0000001277597.169895.1258
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453789.747687.5394coturnix_japonicaENSCJPP0000500079196.604494.2275
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.318695.4259vombatus_ursinusENSVURP0001000904397.472495.5766
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453796.5394.795naja_najaENSNNAP0000001485896.835495.0949
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.4259anas_platyrhynchos_platyrhynchosENSAPLP0000000088597.174394.9765
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.318695.4259phascolarctos_cinereusENSPCIP0000000231997.472495.5766
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.949595.7413chelonoidis_abingdoniiENSCABP0000001286397.641595.4403
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.318695.5836laticauda_laticaudataENSLLTP0000000933097.165495.4331
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453789.589985.8044ficedula_albicollisENSFALP0000000610094.824790.818
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453790.69487.8549anser_brachyrhynchusENSABRP0000000407491.560588.6943
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.4259aquila_chrysaetos_chrysaetosENSACCP0002000183797.174394.9765
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453796.845494.795podarcis_muralisENSPMRP0000003236194.027692.0368
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453781.230379.1798struthio_camelus_australisENSSCUP0000001286196.622994.1839
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453788.643585.6467geospiza_fortisENSGFOP0000001937794.453891.2605
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.4259salvator_merianaeENSSMRP0000002743697.169895.1258
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453766.561561.3565hucho_huchoENSHHUP0000005106892.341485.1204
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.2681strigops_habroptilaENSSHBP0000500179097.174394.8195
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453734.227131.388paramormyrops_kingsleyaeENSPKIP0000003950190.041582.5726
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.634195.5836mus_spicilegusENSMSIP0000001824597.32795.283
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.949595.5836terrapene_carolina_triunguisENSTMTP0000000251897.641595.283
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.791895.7413pelodiscus_sinensisENSPSIP0000000394297.484395.4403
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453733.596230.5994oncorhynchus_tshawytschaENSOTSP0000505172482.558175.1938
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.476395.2681mus_pahariMGP_PahariEiJ_P004145197.169894.9686
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.949595.7413gopherus_evgoodeiENSGEVP0000501280397.641595.4403
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453789.747682.3344scleropages_formosusENSSFOP0001501022389.747682.3344
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453794.479590.5363scleropages_formosusENSSFOP0001500425594.330790.3937
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453794.006391.3249erpetoichthys_calabaricusENSECRP0000002770593.858391.1811
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.160995.5836leptobrachium_leishanenseENSLLEP0000003344394.915393.3744
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453787.539485.3312meleagris_gallopavoENSMGAP0000001287496.689994.2509
ENSXETG00000006635xenopus_tropicalisENSXETP0000001453797.003295.2681pseudonaja_textilisENSPTXP0000000130996.850495.1181

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression