RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSTTRG00000011924	Gene ID		Accession	-
Symbol	TPM2	Alias	-	Full Name	tropomyosin 2
Status	Confidence	Length	7311 bases	Strand	Minus strand
Position	GeneScaffold_1476 : 40230 - 47540	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTTRP00000011310	Tropomyosin	PF00261	1.3e-82	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TPM2-201	ENSTTRT00000011924	960	320aa	ENSTTRP00000011310

Gene Model

Click here to download ENSTTRG00000011924's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTTRG00000011924's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000013789	86.9718	79.5775	tursiops_truncatus	ENSTTRP00000011310	77.1875	70.625
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000014986	75.4386	68.4211	tursiops_truncatus	ENSTTRP00000011310	67.1875	60.9375
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000003533	76.0736	69.0184	tursiops_truncatus	ENSTTRP00000011310	77.5	70.3125

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80.9375	79.0625	ornithorhynchus_anatinus	ENSOANP00000025434	91.1972	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	79.375	78.125	sarcophilus_harrisii	ENSSHAP00000032039	89.4366	88.0282
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	62.8125	62.1875	notamacropus_eugenii	ENSMEUP00000014504	71.5303	70.8185
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	55	53.125	erinaceus_europaeus	ENSEEUP00000004613	75.2137	72.6496
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	dasypus_novemcinctus	ENSDNOP00000027283	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	74.6875	73.4375	echinops_telfairi	ENSETEP00000015878	78.1046	76.7974
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.625	callithrix_jacchus	ENSCJAP00000017750	92.2535	90.8451
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	90.625	89.375	cercocebus_atys	ENSCATP00000037727	90.0621	88.8199
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	76.875	74.6875	macaca_fascicularis	ENSMFAP00000004798	83.3898	81.017
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	90.9375	89.6875	macaca_nemestrina	ENSMNEP00000014959	90.3727	89.1304
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.625	papio_anubis	ENSPANP00000031966	92.2535	90.8451
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	mandrillus_leucophaeus	ENSMLEP00000026904	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	88.125	86.5625	gorilla_gorilla	ENSGGOP00000044018	90.9677	89.3548
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	91.5625	90	pan_paniscus	ENSPPAP00000015406	90.9938	89.441
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.625	pongo_abelii	ENSPPYP00000021388	66.3291	65.3165
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	homo_sapiens	ENSP00000496494	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.9375	canis_lupus_familiaris	ENSCAFP00845012385	92.2535	91.1972
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	pan_troglodytes	ENSPTRP00000070781	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	77.5	75.625	vulpes_vulpes	ENSVVUP00000033536	85.5172	83.4483
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	40.9375	39.0625	ailuropoda_melanoleuca	ENSAMEP00000038226	82.9114	79.1139
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.9375	ursus_americanus	ENSUAMP00000033086	92.2535	91.1972
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.9375	mustela_putorius_furo	ENSMPUP00000005320	92.2535	91.1972
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	felis_catus	ENSFCAP00000011685	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	69.375	65.3125	panthera_leo	ENSPLOP00000020025	74.2475	69.8997
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	panthera_pardus	ENSPPRP00000017589	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.9375	physeter_catodon	ENSPCTP00005027543	92.2535	91.1972
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	87.5	86.25	ochotona_princeps	ENSOPRP00000011650	90.0322	88.746
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	85.625	84.375	procavia_capensis	ENSPCAP00000012590	86.9841	85.7143
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	75	72.1875	delphinapterus_leucas	ENSDLEP00000023746	72.9483	70.2128
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	marmota_marmota_marmota	ENSMMMP00000007762	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	74.0625	70.9375	equus_asinus	ENSEASP00005054229	73.3746	70.2786
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80.9375	80	microcebus_murinus	ENSMICP00000002292	83.0128	82.0513
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	rattus_norvegicus	ENSRNOP00000022801	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	mus_spicilegus	ENSMSIP00000022195	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	68.75	64.375	otolemur_garnettii	ENSOGAP00000010740	72.3684	67.7632
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	91.875	90.625	aotus_nancymaae	ENSANAP00000040401	91.3043	90.0621
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	loxodonta_africana	ENSLAFP00000000415	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	equus_caballus	ENSECAP00000028458	82.8479	82.2006
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	79.6875	78.75	octodon_degus	ENSODEP00000018912	89.7887	88.7324
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	63.75	62.5	sorex_araneus	ENSSARP00000008370	64.557	63.2911
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	panthera_tigris_altaica	ENSPTIP00000004984	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80.625	79.6875	saimiri_boliviensis_boliviensis	ENSSBOP00000009707	89.5833	88.5417
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	jaculus_jaculus	ENSJJAP00000000537	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	camelus_dromedarius	ENSCDRP00005007441	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	91.25	89.0625	pteropus_vampyrus	ENSPVAP00000001973	91.8239	89.6226
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	62.5	57.1875	rhinolophus_ferrumequinum	ENSRFEP00010016141	62.3053	57.0093
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	85	84.375	carlito_syrichta	ENSTSYP00000003940	95.4386	94.7368
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	40	39.375	tupaia_belangeri	ENSTBEP00000000856	48.3019	47.5472
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	bos_mutus	ENSBMUP00000032312	56.1404	55.7018
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	91.25	89.6875	rhinopithecus_bieti	ENSRBIP00000010568	90.6832	89.1304
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	69.6875	65	oryctolagus_cuniculus	ENSOCUP00000039817	63.3523	59.0909
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.875	80.9375	bison_bison_bison	ENSBBBP00000022655	92.2535	91.1972
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	70.625	68.125	myotis_lucifugus	ENSMLUP00000010463	80.427	77.5801
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	68.4375	67.5	chinchilla_lanigera	ENSCLAP00000003174	89.0244	87.8049
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	nomascus_leucogenys	ENSNLEP00000005222	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	79.375	78.4375	sciurus_vulgaris	ENSSVLP00005029646	90.0709	89.0071
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	urocitellus_parryii	ENSUPAP00010022486	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	ovis_aries_rambouillet	ENSOARP00020007247	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	microtus_ochrogaster	ENSMOCP00000019465	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	sus_scrofa	ENSSSCP00000045307	71.3092	70.7521
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	78.125	76.25	prolemur_simus	ENSPSMP00000005973	81.4332	79.4788
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.5625	81.25	bos_grunniens	ENSBGRP00000006636	90	89.6552
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	78.75	balaenoptera_musculus	ENSBMSP00010006677	90.1408	88.7324
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	rhinopithecus_roxellana	ENSRROP00000036087	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.5625	80.3125	propithecus_coquereli	ENSPCOP00000030919	91.9014	90.493
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	peromyscus_maniculatus_bairdii	ENSPEMP00000018827	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	78.125	76.875	phocoena_sinus	ENSPSNP00000021911	75.9878	74.772
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.0625	cebus_imitator	ENSCCAP00000012064	90.1408	89.0845
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	68.75	65	canis_lupus_dingo	ENSCAFP00020022018	67.9012	64.1975
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	79.375	bos_indicus_hybrid	ENSBIXP00005003112	90.1408	89.4366
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	60.9375	44.6875	caenorhabditis_elegans	Y105E8B.1d.1	68.662	50.3521
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	57.1875	38.75	drosophila_melanogaster	FBpp0089270	64.4366	43.662
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	60.9375	42.5	drosophila_melanogaster	FBpp0088904	27.4262	19.128
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	40	22.5	ciona_intestinalis	ENSCINP00000017815	52.8926	29.7521
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	74.6875	67.1875	callorhinchus_milii	ENSCMIP00000027491	80.4714	72.3906
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	79.375	76.875	anas_platyrhynchos_platyrhynchos	ENSAPLP00000028172	89.4366	86.6197
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	78.4375	75.9375	serinus_canaria	ENSSCAP00000002288	87.1528	84.375
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	70.625	65.625	meleagris_gallopavo	ENSMGAP00000002194	81.0036	75.2688
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	77.8125	74.0625	naja_naja	ENSNNAP00000018505	87.6761	83.4507
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	79.375	76.875	taeniopygia_guttata	ENSTGUP00000001928	57.8588	56.0364
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	71.25	68.4375	geospiza_fortis	ENSGFOP00000007558	84.4444	81.1111
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	81.25	78.75	aquila_chrysaetos_chrysaetos	ENSACCP00020022798	91.5493	88.7324
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	68.4375	64.6875	aquila_chrysaetos_chrysaetos	ENSACCP00020023969	83.908	79.3103
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	65.625	54.375	ciona_savignyi	ENSCSAVP00000018448	73.6842	61.0526
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	51.875	39.375	ciona_savignyi	ENSCSAVP00000006827	64.3411	48.8372
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	70.3125	60.625	ciona_savignyi	ENSCSAVP00000007166	79.2253	68.3099
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	60.625	54.375	anolis_carolinensis	ENSACAP00000029221	72.6592	65.1685
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	65.3125	60.9375	leptobrachium_leishanense	ENSLLEP00000036166	78.5714	73.3083
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	80	76.875	podarcis_muralis	ENSPMRP00000020480	65.641	63.0769
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	24.0625	22.1875	gopherus_evgoodei	ENSGEVP00005024155	83.6957	77.1739
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	24.6875	23.75	gopherus_evgoodei	ENSGEVP00005024240	87.7778	84.4444
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	19.0625	18.4375	chelonoidis_abingdonii	ENSCABP00000024456	92.4242	89.3939
ENSTTRG00000011924	tursiops_truncatus	ENSTTRP00000011310	25	24.0625	terrapene_carolina_triunguis	ENSTMTP00000029203	88.8889	85.5556

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression