RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSTNIG00000002617	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3396 bases	Strand	Minus strand
Position	21 : 515135 - 518530	RNA binding domain	GTP_EFTU , GTP_EFTU_D3 , GTP_EFTU_D2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTNIP00000005170	GTP_EFTU	PF00009	4.2e-55	1
ENSTNIP00000005170	GTP_EFTU_D3	PF03143	1e-32	2
ENSTNIP00000005170	GTP_EFTU_D2	PF03144	1.3e-14	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSTNIT00000005316	1570	479aa	ENSTNIP00000005170

Gene Model

Click here to download ENSTNIG00000002617's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTNIG00000002617's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005172	91.1063	83.0803	tetraodon_nigroviridis	ENSTNIP00000005170	87.6827	79.9582
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000013544	20.6943	11.482	tetraodon_nigroviridis	ENSTNIP00000005170	32.3591	17.9541
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000010546	26.2032	16.1765	tetraodon_nigroviridis	ENSTNIP00000005170	40.9186	25.261
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000014575	35.5615	21.9251	tetraodon_nigroviridis	ENSTNIP00000005170	27.7662	17.119
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000014576	40.8072	27.13	tetraodon_nigroviridis	ENSTNIP00000005170	37.9958	25.261
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000009354	24.1111	13.7778	tetraodon_nigroviridis	ENSTNIP00000005170	45.3027	25.8873
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000020273	82.7586	68.9655	tetraodon_nigroviridis	ENSTNIP00000005170	80.167	66.8058
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000007213	38.9831	24.3644	tetraodon_nigroviridis	ENSTNIP00000005170	38.4134	24.0084
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000001091	37.3529	25	tetraodon_nigroviridis	ENSTNIP00000005170	53.0271	35.4906
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005807	28.7435	16.3511	tetraodon_nigroviridis	ENSTNIP00000005170	34.8643	19.833
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005986	16.4247	8.80218	tetraodon_nigroviridis	ENSTNIP00000005170	37.7871	20.2505
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000006842	23.4146	13.3333	tetraodon_nigroviridis	ENSTNIP00000005170	30.0626	17.119
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000009221	27.856	16.9014	tetraodon_nigroviridis	ENSTNIP00000005170	37.1608	22.547
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000013111	51.8	33	tetraodon_nigroviridis	ENSTNIP00000005170	54.071	34.4468
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000015906	43.8687	27.9793	tetraodon_nigroviridis	ENSTNIP00000005170	53.0271	33.8205
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000008028	15.6021	7.95812	tetraodon_nigroviridis	ENSTNIP00000005170	31.1065	15.8664
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000017166	82.0809	71.3873	tetraodon_nigroviridis	ENSTNIP00000005170	59.2902	51.5658
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000012710	90.6926	83.3333	tetraodon_nigroviridis	ENSTNIP00000005170	87.4739	80.3758
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005171	90.6926	83.9827	tetraodon_nigroviridis	ENSTNIP00000005170	87.4739	81.0021
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000007397	29.1391	17.5497	tetraodon_nigroviridis	ENSTNIP00000005170	36.7432	22.1294
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000011467	29.2079	17.6568	tetraodon_nigroviridis	ENSTNIP00000005170	36.952	22.3382
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000015602	26.7857	16.2202	tetraodon_nigroviridis	ENSTNIP00000005170	37.5783	22.7557
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000021997	27.2727	16.7951	tetraodon_nigroviridis	ENSTNIP00000005170	36.952	22.7557
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000016433	27.5964	16.3205	tetraodon_nigroviridis	ENSTNIP00000005170	38.8309	22.9645

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	84.5511	72.4426	dicentrarchus_labrax	ENSDLAP00005006133	88.8158	76.0965
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	83.9248	77.8706	sparus_aurata	ENSSAUP00010066856	83.75	77.7083
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	88.309	80.167	labrus_bergylta	ENSLBEP00000003828	91.9565	83.4783
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	87.6827	78.0793	hippocampus_comes	ENSHCOP00000006653	91.1063	81.128
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	6.26305	2.08768	seriola_lalandi_dorsalis	ENSSLDP00000001964	15	5
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	76.618	70.7724	cynoglossus_semilaevis	ENSCSEP00000012349	88.6473	81.8841
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	75.7829	69.7286	cynoglossus_semilaevis	ENSCSEP00000012380	87.4699	80.4819
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	87.0564	79.7495	larimichthys_crocea	ENSLCRP00005001753	89.2934	81.7987
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	86.2213	77.453	caenorhabditis_elegans	R03G5.1.1	89.2009	80.1296
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	86.2213	77.453	caenorhabditis_elegans	F31E3.5.1	89.2009	80.1296
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	86.2213	76.4092	drosophila_melanogaster	FBpp0304260	89.2009	79.0497
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	86.0125	77.2443	drosophila_melanogaster	FBpp0085193	89.1775	80.0866
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	84.5511	76.618	ciona_intestinalis	ENSCINP00000032763	88.0435	79.7826
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	85.1775	75.9916	eptatretus_burgeri	ENSEBUP00000025667	82.2581	73.3871
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	38.6221	21.5031	danio_rerio	ENSDARP00000113373	21.6882	12.075
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	38.8309	21.0856	danio_rerio	ENSDARP00000118068	21.7799	11.8267
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	69.5198	57.2025	dasypus_novemcinctus	ENSDNOP00000032400	75.1693	61.851
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	18.1628	13.9875	dasypus_novemcinctus	ENSDNOP00000021150	65.9091	50.7576
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	10.2296	7.09812	dasypus_novemcinctus	ENSDNOP00000031356	64.4737	44.7368
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	30.2714	24.6347	dasypus_novemcinctus	ENSDNOP00000022526	57.7689	47.012
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	63.2568	51.1482	dasypus_novemcinctus	ENSDNOP00000020759	67.7852	54.8098
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	61.1691	49.8956	dasypus_novemcinctus	ENSDNOP00000027969	69.9284	57.0406
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	54.071	42.5887	dasypus_novemcinctus	ENSDNOP00000024969	72.9577	57.4648
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	39.666	31.1065	dasypus_novemcinctus	ENSDNOP00000032777	70.8955	55.597
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	23.382	18.7891	macaca_fascicularis	ENSMFAP00000023153	71.7949	57.6923
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	67.8497	55.9499	mustela_putorius_furo	ENSMPUP00000000300	75.9346	62.6168
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	60.7516	47.8079	mustela_putorius_furo	ENSMPUP00000010637	69.4511	54.6539
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	45.929	35.0731	mustela_putorius_furo	ENSMPUP00000011723	70.5128	53.8462
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	67.4322	53.4447	mustela_putorius_furo	ENSMPUP00000006925	71.4602	56.6372
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	12.7349	11.0647	panthera_leo	ENSPLOP00000021448	82.4324	71.6216
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	12.7349	10.856	panthera_pardus	ENSPPRP00000012250	82.4324	70.2703
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	78.2881	67.4322	physeter_catodon	ENSPCTP00005000015	83.7054	72.0982
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	12.7349	10.6472	capra_hircus	ENSCHIP00000010993	64.8936	54.2553
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	45.3027	38.4134	heterocephalus_glaber_female	ENSHGLP00000059370	82.8244	70.229
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	48.0167	32.9854	bos_grunniens	ENSBGRP00000025147	42.5139	29.2052
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	10.2296	7.09812	otolemur_garnettii	ENSOGAP00000019592	66.2162	45.9459
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	84.1336	76.4092	ciona_savignyi	ENSCSAVP00000010846	87.4187	79.3926
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	45.929	37.3695	myotis_lucifugus	ENSMLUP00000017551	72.6073	59.0759
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	63.4656	54.4885	hucho_hucho	ENSHHUP00000026041	84.4444	72.5
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	83.5073	72.8601	saccharomyces_cerevisiae	YBR118W	87.3362	76.2009
ENSTNIG00000002617	tetraodon_nigroviridis	ENSTNIP00000005170	83.5073	72.8601	saccharomyces_cerevisiae	YPR080W	87.3362	76.2009

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression