Description

Ensembl ID ENSTMTG00000005234 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1900 bases Strand Plus strand
Position PRFB02000069.1 : 77015125 - 77017024 RNA binding domain LSM
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSTMTP00000007156 LSM PF01423 2.9e-21 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSTMTT00000007400 258 85aa ENSTMTP00000007156

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000002168355.128241.0256terrapene_carolina_triunguisENSTMTP0000000715650.588237.6471
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP000000126856157terrapene_carolina_triunguisENSTMTP0000000715671.764767.0588
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000123595.294194.1176terrapene_carolina_triunguisENSTMTP0000000715695.294194.1176
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000003052594.252987.3563terrapene_carolina_triunguisENSTMTP0000000715696.470689.4118
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000175996.551796.5517terrapene_carolina_triunguisENSTMTP0000000715698.823598.8235
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000001970678.350577.3196terrapene_carolina_triunguisENSTMTP0000000715689.411888.2353
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000910488.095286.9048terrapene_carolina_triunguisENSTMTP0000000715687.058885.8824
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000002792869.411863.5294terrapene_carolina_triunguisENSTMTP0000000715669.411863.5294

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715676.470665.8824caenorhabditis_elegansZK652.1.176.470665.8824
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715696.470677.6471drosophila_melanogasterFBpp008711893.181875
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP000000071568078.8235callorhinchus_miliiENSCMIP0000003570798.550797.1014
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100latimeria_chalumnaeENSLACP0000000274772.649672.6496
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610095.2941lepisosteus_oculatusENSLOCP0000001937998.837294.186
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715697.647194.1176clupea_harengusENSCHAP0000005497895.402391.954
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471danio_rerioENSDARP0000013425796.590994.3182
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471carassius_auratusENSCARP0000012123360.283758.8652
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706carassius_auratusENSCARP0000012947096.551794.2529
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941astyanax_mexicanusENSAMXP0000000762598.823595.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471ictalurus_punctatusENSIPUP0000002808398.837296.5116
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471electrophorus_electricusENSEEEP0000003531598.837296.5116
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941esox_luciusENSELUP0000000169097.674494.186
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647esox_luciusENSELUP0000003050496.551789.6552
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647oncorhynchus_kisutchENSOKIP0000501163392.307785.7143
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823594.1176oncorhynchus_kisutchENSOKIP0000510221997.674493.0233
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715697.647190.5882oncorhynchus_kisutchENSOKIP0000505215196.511689.5349
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823594.1176oncorhynchus_mykissENSOMYP0000003522794.38289.8876
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647oncorhynchus_mykissENSOMYP0000010962596.551789.6552
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941salmo_salarENSSSAP0000015838097.674494.186
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647salmo_salarENSSSAP0000007993296.551789.6552
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647salmo_truttaENSSTUP0000007823996.551789.6552
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715696.470692.9412salmo_truttaENSSTUP0000006185294.252990.8046
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823594.1176salmo_truttaENSSTUP0000006886794.38289.8876
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706gadus_morhuaENSGMOP0000000827998.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471fundulus_heteroclitusENSFHEP0000000246474.561472.807
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706poecilia_reticulataENSPREP0000003340396.551794.2529
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706xiphophorus_maculatusENSXMAP0000001547098.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706cyclopterus_lumpusENSCLMP0000504008798.837295.3488
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706oreochromis_niloticusENSONIP0000006804498.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706astatotilapia_callipteraENSACLP0000002372198.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715695.294191.7647sparus_aurataENSSAUP0001004321185.263282.1053
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823598.8235sphenodon_punctatusENSSPUP0000001890698.823598.8235
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100laticauda_laticaudataENSLLTP0000001024097.701197.7011
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100notechis_scutatusENSNSUP0000002355197.701197.7011
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100pseudonaja_textilisENSPTXP00000003470100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610098.8235anas_platyrhynchos_platyrhynchosENSAPLP0000002580995.505694.382
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100meleagris_gallopavoENSMGAP00000011977100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823598.8235serinus_canariaENSSCAP0000000928598.823598.8235
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715674.117674.1176choloepus_hoffmanniENSCHOP0000000830698.437598.4375
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100sarcophilus_harrisiiENSSHAP0000001439454.838754.8387
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100erinaceus_europaeusENSEEUP00000012303100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715682.352980gorilla_gorillaENSGGOP0000004031989.743687.1795
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715683.529480pan_paniscusENSPPAP0000002904491.025687.1795
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715683.529480pan_troglodytesENSPTRP0000007662791.025687.1795
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715694.117692.9412canis_lupus_familiarisENSCAFP0084502442793.023391.8605
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100loxodonta_africanaENSLAFP0000001461698.837298.8372
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100equus_caballusENSECAP0000007257556.666756.6667
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715687.058884.7059bos_taurusENSBTAP0000006375891.35888.8889
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715695.294183.5294ovis_aries_rambouilletENSOARP0002002007365.322657.2581
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100cricetulus_griseus_chok1gshdENSCGRP0000101690895.505695.5056
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715685.882485.8824dipodomys_ordiiENSDORP0000002148989.024489.0244
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715687.058887.0588mesocricetus_auratusENSMAUP00000022253100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715687.058887.0588mesocricetus_auratusENSMAUP00000018274100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100mus_spicilegusENSMSIP0000000722256.666756.6667
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100heterocephalus_glaber_femaleENSHGLP0000003348255.921155.9211
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706dicentrarchus_labraxENSDLAP0000500523398.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100pelodiscus_sinensisENSPSIP0000001852398.837298.8372
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471erpetoichthys_calabaricusENSECRP0000003259398.837296.5116
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471cyprinodon_variegatusENSCVAP0000001312467.460365.873
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715691.764788.2353bos_grunniensENSBGRP0000004117577.227774.2574
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715688.235385.8824bos_indicus_hybridENSBIXP0000502333992.592690.1235
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715695.294194.1176microcebus_murinusENSMICP0000002409064.864
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941oryzias_melastigmaENSOMEP0000000209398.823595.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471neolamprologus_brichardiENSNBRP0000001507886.734784.6939
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100chinchilla_lanigeraENSCLAP0000001042197.701197.7011
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706kryptolebias_marmoratusENSKMAP0000001825197.674495.3488
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715695.294190.5882aotus_nancymaaeENSANAP0000000439274.311970.6422
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715694.117684.7059saimiri_boliviensis_boliviensisENSSBOP0000002218789.887680.8989
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941pygocentrus_nattereriENSPNAP0000001323498.823595.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706poecilia_latipinnaENSPLAP0000000008498.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823598.8235jaculus_jaculusENSJJAP0000000668296.551796.5517
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823587.0588ciona_savignyiENSCSAVP0000001276795.454584.0909
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706scophthalmus_maximusENSSMAP0000000904498.837295.3488
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100myotis_lucifugusENSMLUP00000012357100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706labrus_bergyltaENSLBEP0000001141898.837295.3488
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715684.705978.8235cottoperca_gobioENSCGOP0000005172677.419472.043
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706cottoperca_gobioENSCGOP0000005174998.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706amphilophus_citrinellusENSACIP0000001705598.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100ficedula_albicollisENSFALP0000002965959.859259.8592
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706anabas_testudineusENSATEP0000003289490.322688.172
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706gasterosteus_aculeatusENSGACP0000002649710096.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647hucho_huchoENSHHUP0000006187096.551789.6552
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823594.1176hucho_huchoENSHHUP0000002919297.674493.0233
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647hucho_huchoENSHHUP0000000378896.551789.6552
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823591.7647oncorhynchus_tshawytschaENSOTSP0000510188592.307785.7143
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715697.647190.5882oncorhynchus_tshawytschaENSOTSP0000501403596.511689.5349
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471acanthochromis_polyacanthusENSAPOP0000002228166.406264.8438
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706amphiprion_ocellarisENSAOCP0000001088098.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706tetraodon_nigroviridisENSTNIP0000001564698.837295.3488
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715665.882460salvator_merianaeENSSMRP0000000679269.135862.963
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715688.235381.1765salvator_merianaeENSSMRP0000002574960.483955.6452
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941nothobranchius_furzeriENSNFUP0001502182198.823595.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471sinocyclocheilus_grahamiENSSGRP0000010219998.837296.5116
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706sinocyclocheilus_grahamiENSSGRP0000007638197.701194.2529
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706maylandia_zebraENSMZEP0000502062798.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471scleropages_formosusENSSFOP0001503372196.590994.3182
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715689.411888.2353chelonoidis_abingdoniiENSCABP0000002857092.682991.4634
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471stegastes_partitusENSSPAP0000000440596.590994.3182
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP00000007156100100aquila_chrysaetos_chrysaetosENSACCP00020021590100100
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471larimichthys_croceaENSLCRP0000503905550.898249.7006
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941sander_luciopercaENSSLUP0000001539898.823595.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715694.117692.9412canis_lupus_dingoENSCAFP0002001350293.023391.8605
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823597.6471denticeps_clupeoidesENSDCDP0000003939897.674496.5116
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706amphiprion_perculaENSAPEP0000003107898.823596.4706
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715658.823549.4118saccharomyces_cerevisiaeYPR182W58.139548.8372
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823595.2941mastacembelus_armatusENSMAMP0000002487698.823595.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715675.294175.2941leptobrachium_leishanenseENSLLEP0000003212075.294175.2941
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610096.4706cynoglossus_semilaevisENSCSEP0000000736587.628984.5361
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715696.470690.5882carlito_syrichtaENSTSYP0000002483268.907664.7059
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706seriola_lalandi_dorsalisENSSLDP0000000655497.674495.3488
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471cyprinus_carpio_carpioENSCCRP0000011497365.384663.8462
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715676.470670.5882nannospalax_galiliENSNGAP0000000445576.470670.5882
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471myripristis_murdjanENSMMDP0000504049495.505693.2584
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715610097.6471paramormyrops_kingsleyaeENSPKIP0000003608393.406691.2088
ENSTMTG00000005234terrapene_carolina_triunguisENSTMTP0000000715698.823596.4706pundamilia_nyerereiENSPNYP0000002885898.823596.4706

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression