RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSTMTG00000001014	Gene ID	112108474	Accession	-
Symbol		Alias	-	Full Name	small nuclear ribonucleoprotein F-like
Status	Confidence	Length	258 bases	Strand	Minus strand
Position	PRFB02000043.1 : 6553374 - 6553631	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTMTP00000001235	LSM	PF01423	8e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSTMTT00000001273	258	85aa	ENSTMTP00000001235

Gene Model

Click here to download ENSTMTG00000001014's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTMTG00000001014's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000021683	57.6923	42.3077	terrapene_carolina_triunguis	ENSTMTP00000001235	52.9412	38.8235
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000030525	93.1034	85.0575	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	87.0588
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001759	93.1034	91.954	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	94.1176
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000012685	58	55	terrapene_carolina_triunguis	ENSTMTP00000001235	68.2353	64.7059
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000007156	95.2941	94.1176	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	94.1176
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000019706	76.2887	74.2268	terrapene_carolina_triunguis	ENSTMTP00000001235	87.0588	84.7059
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000009104	86.9048	84.5238	terrapene_carolina_triunguis	ENSTMTP00000001235	85.8824	83.5294
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000027928	68.2353	61.1765	terrapene_carolina_triunguis	ENSTMTP00000001235	68.2353	61.1765

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	71.7647	61.1765	caenorhabditis_elegans	ZK652.1.1	71.7647	61.1765
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	91.7647	71.7647	drosophila_melanogaster	FBpp0087118	88.6364	69.3182
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	76.4706	74.1176	callorhinchus_milii	ENSCMIP00000035707	94.2029	91.3043
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	94.1176	latimeria_chalumnae	ENSLACP00000002747	69.2308	68.3761
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	90.5882	lepisosteus_oculatus	ENSLOCP00000019379	95.3488	89.5349
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	92.9412	88.2353	clupea_harengus	ENSCHAP00000054978	90.8046	86.2069
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	92.9412	danio_rerio	ENSDARP00000134257	93.1818	89.7727
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	92.9412	carassius_auratus	ENSCARP00000121233	58.156	56.0284
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	carassius_auratus	ENSCARP00000129470	93.1034	88.5057
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	astyanax_mexicanus	ENSAMXP00000007625	95.2941	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	92.9412	ictalurus_punctatus	ENSIPUP00000028083	95.3488	91.8605
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	92.9412	electrophorus_electricus	ENSEEEP00000035315	95.3488	91.8605
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	esox_lucius	ENSELUP00000001690	94.186	89.5349
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	87.0588	esox_lucius	ENSELUP00000030504	93.1034	85.0575
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	85.8824	oncorhynchus_kisutch	ENSOKIP00005011633	87.9121	80.2198
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	89.4118	oncorhynchus_kisutch	ENSOKIP00005102219	94.186	88.3721
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	92.9412	84.7059	oncorhynchus_kisutch	ENSOKIP00005052151	91.8605	83.7209
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	88.2353	oncorhynchus_mykiss	ENSOMYP00000035227	89.8876	84.2697
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	87.0588	oncorhynchus_mykiss	ENSOMYP00000109625	93.1034	85.0575
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	salmo_salar	ENSSSAP00000158380	94.186	89.5349
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	85.8824	salmo_salar	ENSSSAP00000079932	91.954	83.908
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	87.0588	salmo_trutta	ENSSTUP00000078239	93.1034	85.0575
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	91.7647	87.0588	salmo_trutta	ENSSTUP00000061852	89.6552	85.0575
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	88.2353	salmo_trutta	ENSSTUP00000068867	89.8876	84.2697
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	gadus_morhua	ENSGMOP00000008279	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	fundulus_heteroclitus	ENSFHEP00000002464	71.0526	68.4211
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	poecilia_reticulata	ENSPREP00000033403	91.954	88.5057
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	xiphophorus_maculatus	ENSXMAP00000015470	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	91.7647	cyclopterus_lumpus	ENSCLMP00005040087	95.3488	90.6977
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	oreochromis_niloticus	ENSONIP00000068044	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	astatotilapia_calliptera	ENSACLP00000023721	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	90.5882	85.8824	sparus_aurata	ENSSAUP00010043211	81.0526	76.8421
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	94.1176	chrysemys_picta_bellii	ENSCPBP00000007921	94.186	93.0233
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	72.9412	72.9412	choloepus_hoffmanni	ENSCHOP00000008306	96.875	96.875
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	ailuropoda_melanoleuca	ENSAMEP00000002271	33.6066	33.1967
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	83.5294	80	bos_taurus	ENSBTAP00000063758	87.6543	83.9506
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	91.7647	78.8235	ovis_aries_rambouillet	ENSOARP00020020073	62.9032	54.0323
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	cavia_porcellus	ENSCPOP00000012527	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	dicentrarchus_labrax	ENSDLAP00005005233	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	92.9412	erpetoichthys_calabaricus	ENSECRP00000032593	95.3488	91.8605
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	monodelphis_domestica	ENSMODP00000010061	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	cyprinodon_variegatus	ENSCVAP00000013124	64.2857	61.9048
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	88.2353	83.5294	bos_grunniens	ENSBGRP00000041175	74.2574	70.297
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	96.4706	vombatus_ursinus	ENSVURP00010017816	95.3488	95.3488
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	84.7059	81.1765	bos_indicus_hybrid	ENSBIXP00005023339	88.8889	85.1852
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	microcebus_murinus	ENSMICP00000026464	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	92.9412	otolemur_garnettii	ENSOGAP00000018581	94.186	91.8605
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	89.4118	oryzias_melastigma	ENSOMEP00000002093	94.1176	89.4118
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	neolamprologus_brichardi	ENSNBRP00000015078	82.6531	79.5918
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	kryptolebias_marmoratus	ENSKMAP00000018251	94.186	90.6977
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	89.4118	pygocentrus_nattereri	ENSPNAP00000013234	94.1176	89.4118
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	bison_bison_bison	ENSBBBP00000027527	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	poecilia_latipinna	ENSPLAP00000000084	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	83.5294	ciona_savignyi	ENSCSAVP00000012767	90.9091	80.6818
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	91.7647	scophthalmus_maximus	ENSSMAP00000009044	95.3488	90.6977
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	sciurus_vulgaris	ENSSVLP00005006211	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	91.7647	labrus_bergylta	ENSLBEP00000011418	95.3488	90.6977
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	81.1765	74.1176	cottoperca_gobio	ENSCGOP00000051726	74.1936	67.7419
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	cottoperca_gobio	ENSCGOP00000051749	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	amphilophus_citrinellus	ENSACIP00000017055	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	anabas_testudineus	ENSATEP00000032894	86.0215	82.7957
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	gasterosteus_aculeatus	ENSGACP00000026497	95.2941	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	bos_mutus	ENSBMUP00000024795	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	87.0588	hucho_hucho	ENSHHUP00000061870	93.1034	85.0575
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	89.4118	hucho_hucho	ENSHHUP00000029192	94.186	88.3721
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	87.0588	hucho_hucho	ENSHHUP00000003788	93.1034	85.0575
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	85.8824	oncorhynchus_tshawytscha	ENSOTSP00005101885	87.9121	80.2198
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	92.9412	84.7059	oncorhynchus_tshawytscha	ENSOTSP00005014035	91.8605	83.7209
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	acanthochromis_polyacanthus	ENSAPOP00000022281	63.2812	60.9375
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	amphiprion_ocellaris	ENSAOCP00000010880	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	91.7647	tetraodon_nigroviridis	ENSTNIP00000015646	95.3488	90.6977
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	64.7059	56.4706	salvator_merianae	ENSSMRP00000006792	67.9012	59.2593
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	84.7059	76.4706	salvator_merianae	ENSSMRP00000025749	58.0645	52.4194
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	89.4118	nothobranchius_furzeri	ENSNFUP00015021821	94.1176	89.4118
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	92.9412	sinocyclocheilus_grahami	ENSSGRP00000102199	95.3488	91.8605
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	sinocyclocheilus_grahami	ENSSGRP00000076381	93.1034	88.5057
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	maylandia_zebra	ENSMZEP00005020627	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	scleropages_formosus	ENSSFOP00015033721	92.0455	88.6364
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	stegastes_partitus	ENSSPAP00000004405	92.0455	88.6364
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	larimichthys_crocea	ENSLCRP00005039055	48.503	46.7066
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	89.4118	sander_lucioperca	ENSSLUP00000015398	94.1176	89.4118
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	92.9412	denticeps_clupeoides	ENSDCDP00000039398	94.186	91.8605
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	amphiprion_percula	ENSAPEP00000031078	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	57.6471	45.8824	saccharomyces_cerevisiae	YPR182W	56.9767	45.3488
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	89.4118	mastacembelus_armatus	ENSMAMP00000024876	94.1176	89.4118
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	72.9412	72.9412	leptobrachium_leishanense	ENSLLEP00000032120	72.9412	72.9412
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	95.2941	neovison_vison	ENSNVIP00000009783	95.3488	94.186
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	90.5882	cynoglossus_semilaevis	ENSCSEP00000007365	83.5052	79.3814
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	92.9412	89.4118	gopherus_evgoodei	ENSGEVP00005003764	72.4771	69.7248
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	91.7647	85.8824	carlito_syrichta	ENSTSYP00000024832	65.5462	61.3445
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	seriola_lalandi_dorsalis	ENSSLDP00000006554	94.186	90.6977
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	96.4706	91.7647	cyprinus_carpio_carpio	ENSCCRP00000114973	63.0769	60
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	74.1176	67.0588	nannospalax_galili	ENSNGAP00000004455	74.1176	67.0588
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	myripristis_murdjan	ENSMMDP00005040494	91.0112	87.6404
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	91.7647	paramormyrops_kingsleyae	ENSPKIP00000036083	89.011	85.7143
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	94.1176	90.5882	pundamilia_nyererei	ENSPNYP00000028858	94.1176	90.5882
ENSTMTG00000001014	terrapene_carolina_triunguis	ENSTMTP00000001235	95.2941	94.1176	cebus_imitator	ENSCCAP00000003058	94.186	93.0233

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression