RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSTGUG00000029303	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5179 bases	Strand	Minus strand
Position	RRCB01000041.1 : 2692350 - 2697528	RNA binding domain	Ribosomal_L11 , Ribosomal_L11_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTGUP00000025570	Ribosomal_L11	PF00298	1.1e-17	1
ENSTGUP00000025570	Ribosomal_L11_N	PF03946	1.7e-11	2
ENSTGUP00000026081	Ribosomal_L11	PF00298	1.4e-13	1
ENSTGUP00000026081	Ribosomal_L11_N	PF03946	1.6e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSTGUT00000019656	2667	339aa	ENSTGUP00000026081
-	ENSTGUT00000031187	1944	330aa	ENSTGUP00000025570

Gene Model

Click here to download ENSTGUG00000029303's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTGUG00000029303's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000029938	88.8179	87.5399	taeniopygia_guttata	ENSTGUP00000026081	82.0059	80.826

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	30.0885	24.1888	strigops_habroptila	ENSSHBP00005023122	54.5455	43.8503
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	18.2891	15.6342	callorhinchus_milii	ENSCMIP00000000262	67.3913	57.6087
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	23.5988	14.1593	oncorhynchus_kisutch	ENSOKIP00005061494	47.9042	28.7425
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	23.3038	14.1593	oncorhynchus_mykiss	ENSOMYP00000102297	45.6647	27.7457
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	22.4189	13.5693	dasypus_novemcinctus	ENSDNOP00000025501	40.8602	24.7312
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	22.7139	14.1593	ochotona_princeps	ENSOPRP00000007745	39.8964	24.8705
ENSTGUG00000029303	taeniopygia_guttata	ENSTGUP00000026081	24.7788	17.1091	oncorhynchus_tshawytscha	ENSOTSP00005031417	44.6809	30.8511

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression