RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSTGUG00000019544	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3112 bases	Strand	Plus strand
Position	RRCB01000041.1 : 2849644 - 2852755	RNA binding domain	Ribosomal_L11 , Ribosomal_L11_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTGUP00000036448	Ribosomal_L11	PF00298	5.5e-18	1
ENSTGUP00000036448	Ribosomal_L11_N	PF03946	1.4e-22	2
ENSTGUP00000029938	Ribosomal_L11	PF00298	1.6e-17	1
ENSTGUP00000029938	Ribosomal_L11_N	PF03946	1.4e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSTGUT00000019901	2057	313aa	ENSTGUP00000029938
-	ENSTGUT00000028345	1681	199aa	ENSTGUP00000036448

Gene Model

Click here to download ENSTGUG00000019544's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTGUG00000019544's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000026081	82.0059	80.826	taeniopygia_guttata	ENSTGUP00000029938	88.8179	87.5399

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	31.6294	26.1981	strigops_habroptila	ENSSHBP00005023122	52.9412	43.8503
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	19.1693	15.9744	callorhinchus_milii	ENSCMIP00000000262	65.2174	54.3478
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	24.2812	14.6965	oncorhynchus_kisutch	ENSOKIP00005061494	45.509	27.5449
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	23.6422	14.377	oncorhynchus_mykiss	ENSOMYP00000102297	42.7746	26.0116
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	23.9617	15.9744	dasypus_novemcinctus	ENSDNOP00000025501	40.3226	26.8817
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	23.3227	17.2524	ochotona_princeps	ENSOPRP00000007745	37.8238	27.9793
ENSTGUG00000019544	taeniopygia_guttata	ENSTGUP00000029938	24.9201	17.2524	oncorhynchus_tshawytscha	ENSOTSP00005031417	41.4894	28.7234

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression