RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSTGUG00000019522	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	6479 bases	Strand	Plus strand
Position	28 : 805149 - 811627	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTGUP00000028573	LSM	PF01423	3.9e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSTGUT00000023898	1795	150aa	ENSTGUP00000028573

Gene Model

Click here to download ENSTGUG00000019522's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTGUG00000019522's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000027042	68.3099	63.3803	taeniopygia_guttata	ENSTGUP00000028573	64.6667	60

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	74	72.6667	ficedula_albicollis	ENSFALP00000009882	64.1618	63.0058
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	58.6667	56	struthio_camelus_australis	ENSSCUP00000019095	89.7959	85.7143
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	58	51.3333	fundulus_heteroclitus	ENSFHEP00000014705	69.6	61.6
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	45.3333	42.6667	notechis_scutatus	ENSNSUP00000004928	78.1609	73.5632
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	48.6667	46.6667	notamacropus_eugenii	ENSMEUP00000013559	92.4051	88.6076
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	72	66.6667	echinops_telfairi	ENSETEP00000002548	87.0968	80.6452
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	66.6667	58.6667	callithrix_jacchus	ENSCJAP00000092745	55.5556	48.8889
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	66	57.3333	ailuropoda_melanoleuca	ENSAMEP00000026469	55	47.7778
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	58.6667	55.3333	tursiops_truncatus	ENSTTRP00000006136	96.7033	91.2088
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	65.3333	62	mesocricetus_auratus	ENSMAUP00000021098	95.1456	90.2913
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	56.6667	51.3333	cyprinodon_variegatus	ENSCVAP00000031045	73.913	66.9565
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	60	54	catagonus_wagneri	ENSCWAP00000000532	71.4286	64.2857
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	61.3333	57.3333	amphilophus_citrinellus	ENSACIP00000014068	80	74.7826
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	59.3333	53.3333	propithecus_coquereli	ENSPCOP00000006084	77.3913	69.5652
ENSTGUG00000019522	taeniopygia_guttata	ENSTGUP00000028573	62.6667	58.6667	nomascus_leucogenys	ENSNLEP00000038274	75.2	70.4

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression