RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSTGUG00000001027	Gene ID	100190604	Accession	-
Symbol	LSM4	Alias	-	Full Name	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Status	Confidence	Length	115058 bases	Strand	Plus strand
Position	28 : 804899 - 919956	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSTGUP00000001052	LSM	PF01423	8.8e-17	1
ENSTGUP00000026737	LSM	PF01423	8.8e-17	1
ENSTGUP00000031118	LSM	PF01423	8.8e-17	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
LSM4-201	ENSTGUT00000001064	1745	138aa	ENSTGUP00000001052
LSM4-202	ENSTGUT00000041038	1797	138aa	ENSTGUP00000026737
LSM4-203	ENSTGUT00000037588	4534	142aa	ENSTGUP00000027042
LSM4-204	ENSTGUT00000039996	1745	138aa	ENSTGUP00000031118

Gene Model

Click here to download ENSTGUG00000001027's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSTGUG00000001027's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000028573	64.6667	60	taeniopygia_guttata	ENSTGUP00000027042	68.3099	63.3803

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	69.0141	64.7887	ficedula_albicollis	ENSFALP00000009882	56.6474	53.1792
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	61.9718	59.8592	struthio_camelus_australis	ENSSCUP00000019095	89.7959	86.7347
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	61.2676	53.5211	fundulus_heteroclitus	ENSFHEP00000014705	69.6	60.8
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	46.4789	44.3662	notechis_scutatus	ENSNSUP00000004928	75.8621	72.4138
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	51.4085	49.2958	notamacropus_eugenii	ENSMEUP00000013559	92.4051	88.6076
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	66.9014	59.1549	echinops_telfairi	ENSETEP00000002548	76.6129	67.7419
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	68.3099	61.9718	callithrix_jacchus	ENSCJAP00000092745	53.8889	48.8889
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	72.5352	62.6761	ailuropoda_melanoleuca	ENSAMEP00000026469	57.2222	49.4444
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	61.9718	58.4507	tursiops_truncatus	ENSTTRP00000006136	96.7033	91.2088
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	62.6761	56.338	mesocricetus_auratus	ENSMAUP00000021098	86.4078	77.6699
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	57.7465	52.8169	cyprinodon_variegatus	ENSCVAP00000031045	71.3043	65.2174
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	64.0845	55.6338	catagonus_wagneri	ENSCWAP00000000532	72.2222	62.6984
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	58.4507	51.4085	amphilophus_citrinellus	ENSACIP00000014068	72.1739	63.4783
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	57.7465	46.4789	propithecus_coquereli	ENSPCOP00000006084	71.3043	57.3913
ENSTGUG00000001027	taeniopygia_guttata	ENSTGUP00000027042	61.9718	57.7465	nomascus_leucogenys	ENSNLEP00000038274	70.4	65.6

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression