RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSVLG00005014460	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	177 bases	Strand	Minus strand
Position	3 : 24095735 - 24095911	RNA binding domain	DNA_RNApol_7kD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSVLP00005017999	DNA_RNApol_7kD	PF03604	2.1e-17	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSVLT00005020034	177	58aa	ENSSVLP00005017999

Gene Model

Click here to download ENSSVLG00005014460's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSVLG00005014460's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005003387	100	100	sciurus_vulgaris	ENSSVLP00005017999	98.2759	98.2759
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005016493	100	98.2759	sciurus_vulgaris	ENSSVLP00005017999	100	98.2759
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005003910	100	100	sciurus_vulgaris	ENSSVLP00005017999	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005027274	98.2759	98.2759	sciurus_vulgaris	ENSSVLP00005017999	98.2759	98.2759

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	87.931	87.931	ornithorhynchus_anatinus	ENSOANP00000044578	94.4444	94.4444
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	callithrix_jacchus	ENSCJAP00000064715	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	gorilla_gorilla	ENSGGOP00000018982	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	homo_sapiens	ENSP00000342889	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	87.931	70.6897	ursus_americanus	ENSUAMP00000009736	71.831	57.7465
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	ailuropoda_melanoleuca	ENSAMEP00000023971	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	93.1034	93.1034	loxodonta_africana	ENSLAFP00000004399	94.7368	94.7368
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	74.1379	65.5172	equus_asinus	ENSEASP00005024203	72.8814	64.4068
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	camelus_dromedarius	ENSCDRP00005020073	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	capra_hircus	ENSCHIP00000010223	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	98.2759	capra_hircus	ENSCHIP00000003603	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	cavia_porcellus	ENSCPOP00000030421	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	98.2759	octodon_degus	ENSODEP00000026365	100	98.2759
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	98.2759	octodon_degus	ENSODEP00000005787	100	98.2759
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	octodon_degus	ENSODEP00000025379	98.2759	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	96.5517	94.8276	octodon_degus	ENSODEP00000026836	96.5517	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	bos_grunniens	ENSBGRP00000016995	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	98.2759	chinchilla_lanigera	ENSCLAP00000014532	100	98.2759
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	aotus_nancymaae	ENSANAP00000027291	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	87.931	87.931	sorex_araneus	ENSSARP00000001402	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	bison_bison_bison	ENSBBBP00000004393	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	pteropus_vampyrus	ENSPVAP00000009418	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	chlorocebus_sabaeus	ENSCSAP00000008348	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	100	canis_lupus_dingo	ENSCAFP00020000271	100	100
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	77.5862	67.2414	caenorhabditis_elegans	F23B2.13a.1	72.5806	62.9032
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	77.5862	67.2414	drosophila_melanogaster	FBpp0111294	78.9474	68.4211
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	82.7586	72.4138	ciona_intestinalis	ENSCINP00000032951	60.7595	53.1646
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	latimeria_chalumnae	ENSLACP00000017882	96.6102	93.2203
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	94.8276	lepisosteus_oculatus	ENSLOCP00000011880	100	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	93.1034	clupea_harengus	ENSCHAP00000021225	98.2759	93.1034
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	94.8276	danio_rerio	ENSDARP00000099037	100	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	96.5517	93.1034	carassius_auratus	ENSCARP00000015439	96.5517	93.1034
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	91.3793	carassius_auratus	ENSCARP00000078069	98.2759	91.3793
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	81.0345	72.4138	astyanax_mexicanus	ENSAMXP00000034843	85.4545	76.3636
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	93.1034	electrophorus_electricus	ENSEEEP00000045592	100	93.1034
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	esox_lucius	ENSELUP00000015159	98.2759	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	89.6552	87.931	oncorhynchus_kisutch	ENSOKIP00005044911	91.2281	89.4737
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	salmo_salar	ENSSSAP00000141544	37.5	36.8421
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	87.931	86.2069	salmo_trutta	ENSSTUP00000075153	89.4737	87.7193
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	gadus_morhua	ENSGMOP00000058499	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	70.6897	65.5172	fundulus_heteroclitus	ENSFHEP00000017931	69.4915	64.4068
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	cyclopterus_lumpus	ENSCLMP00005004270	98.2759	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	oreochromis_niloticus	ENSONIP00000080842	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	haplochromis_burtoni	ENSHBUP00000022171	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	91.3793	sparus_aurata	ENSSAUP00010003545	98.2759	91.3793
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	94.8276	91.3793	xenopus_tropicalis	ENSXETP00000112976	82.0896	79.1045
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	98.2759	sphenodon_punctatus	ENSSPUP00000023735	100	98.2759
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	94.8276	86.2069	notechis_scutatus	ENSNSUP00000016931	94.8276	86.2069
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	91.3793	82.7586	pseudonaja_textilis	ENSPTXP00000001280	91.3793	82.7586
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	anas_platyrhynchos_platyrhynchos	ENSAPLP00000017392	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	serinus_canaria	ENSSCAP00000005411	53.7037	51.8519
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	96.5517	94.8276	dicentrarchus_labrax	ENSDLAP00005047473	96.5517	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	pelodiscus_sinensis	ENSPSIP00000004349	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	erpetoichthys_calabaricus	ENSECRP00000019052	98.2759	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	cyprinodon_variegatus	ENSCVAP00000032730	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	cyprinodon_variegatus	ENSCVAP00000003937	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	94.8276	86.2069	naja_naja	ENSNNAP00000014594	94.8276	86.2069
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	neolamprologus_brichardi	ENSNBRP00000017536	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	kryptolebias_marmoratus	ENSKMAP00000022040	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	kryptolebias_marmoratus	ENSKMAP00000010309	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	geospiza_fortis	ENSGFOP00000018900	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	82.7586	72.4138	ciona_savignyi	ENSCSAVP00000015948	60.7595	53.1646
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	cottoperca_gobio	ENSCGOP00000012713	98.2759	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	96.5517	scophthalmus_maximus	ENSSMAP00000011667	98.2759	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	pundamilia_nyererei	ENSPNYP00000016160	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	betta_splendens	ENSBSLP00000036839	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	larimichthys_crocea	ENSLCRP00005029863	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	94.8276	86.2069	hippocampus_comes	ENSHCOP00000013165	94.8276	86.2069
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	mastacembelus_armatus	ENSMAMP00000021262	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	93.1034	cynoglossus_semilaevis	ENSCSEP00000027187	98.2759	93.1034
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	aquila_chrysaetos_chrysaetos	ENSACCP00020002119	43.609	42.1053
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	94.8276	87.931	chelonoidis_abingdonii	ENSCABP00000023891	40.7407	37.7778
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	amphiprion_percula	ENSAPEP00000015196	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	93.1034	89.6552	salvator_merianae	ENSSMRP00000027445	93.1034	89.6552
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	89.6552	79.3103	salvator_merianae	ENSSMRP00000018891	91.2281	80.7018
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	62.069	43.1034	saccharomyces_cerevisiae	YHR143W-A	51.4286	35.7143
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	scleropages_formosus	ENSSFOP00015004399	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	ficedula_albicollis	ENSFALP00000016455	45.3125	43.75
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	87.931	86.2069	oncorhynchus_tshawytscha	ENSOTSP00005040162	89.4737	87.7193
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	96.5517	94.8276	podarcis_muralis	ENSPMRP00000032582	96.5517	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	94.8276	sinocyclocheilus_grahami	ENSSGRP00000048358	100	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	seriola_lalandi_dorsalis	ENSSLDP00000017710	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	75.8621	70.6897	struthio_camelus_australis	ENSSCUP00000012883	47.3118	44.086
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	91.3793	cyprinus_carpio_carpio	ENSCCRP00000138250	33.1395	30.814
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	98.2759	94.8276	anabas_testudineus	ENSATEP00000066098	98.2759	94.8276
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	96.5517	93.1034	labrus_bergylta	ENSLBEP00000036204	96.5517	93.1034
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	100	96.5517	maylandia_zebra	ENSMZEP00005004187	100	96.5517
ENSSVLG00005014460	sciurus_vulgaris	ENSSVLP00005017999	74.1379	67.2414	gopherus_evgoodei	ENSGEVP00005005506	62.3188	56.5217

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression