RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSTOG00000024314	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1382 bases	Strand	Plus strand
Position	JH393530.1 : 2257287 - 2258668	RNA binding domain	CSD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSTOP00000028910	CSD	PF00313	1.6e-25	1
ENSSTOP00000025854	CSD	PF00313	1.6e-25	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSTOT00000021863	927	309aa	ENSSTOP00000028910
-	ENSSTOT00000039049	951	317aa	ENSSTOP00000025854

Gene Model

Click here to download ENSSTOG00000024314's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSTOG00000024314's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000007729	56.2044	45.6204	ictidomys_tridecemlineatus	ENSSTOP00000025854	48.5804	39.4322
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000000102	87.5862	84.8276	ictidomys_tridecemlineatus	ENSSTOP00000025854	80.1262	77.6025
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000031278	45.6989	31.1828	ictidomys_tridecemlineatus	ENSSTOP00000025854	26.8139	18.2965
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000003875	46.6667	31.9048	ictidomys_tridecemlineatus	ENSSTOP00000025854	30.9148	21.1356
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000002400	35.7664	25.5474	ictidomys_tridecemlineatus	ENSSTOP00000025854	30.9148	22.082
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000001876	54.1667	48.3974	ictidomys_tridecemlineatus	ENSSTOP00000025854	53.3123	47.6341
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025837	53.2353	47.3529	ictidomys_tridecemlineatus	ENSSTOP00000025854	57.0978	50.7886

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	37.5394	32.4921	callithrix_jacchus	ENSCJAP00000074095	54.5872	47.2477
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	71.9243	66.5615	papio_anubis	ENSPANP00000000234	69.0909	63.9394
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	72.2397	66.877	gorilla_gorilla	ENSGGOP00000022365	81.7857	75.7143
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	77.2871	72.2397	gorilla_gorilla	ENSGGOP00000018996	77.044	72.0126
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	73.817	67.1924	pan_paniscus	ENSPPAP00000008452	75.7282	68.932
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	72.8707	69.0852	pongo_abelii	ENSPPYP00000034529	77.7778	73.7374
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	56.1514	47.9495	vulpes_vulpes	ENSVVUP00000005708	48.5014	41.4169
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	73.1861	69.0852	equus_caballus	ENSECAP00000089892	72.0497	68.0124
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	63.0915	57.7287	sus_scrofa	ENSSSCP00000009451	75.7576	69.3182
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	64.9842	57.4132	camelus_dromedarius	ENSCDRP00005017671	67.541	59.6721
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	64.9842	60.2524	oryctolagus_cuniculus	ENSOCUP00000025635	67.101	62.215
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	70.0315	63.4069	urocitellus_parryii	ENSUPAP00010011500	58.5752	53.0343
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	70.0315	65.2997	marmota_marmota_marmota	ENSMMMP00000013635	69.5925	64.8903
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	72.5552	68.1388	mesocricetus_auratus	ENSMAUP00000018029	75.9076	71.2871
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	36.2776	27.7603	heterocephalus_glaber_female	ENSHGLP00000057235	56.6502	43.3498
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	64.3533	59.6215	bos_grunniens	ENSBGRP00000019828	46.789	43.3486
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	63.7224	59.6215	otolemur_garnettii	ENSOGAP00000006070	81.7814	76.5182
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	71.6088	65.2997	microcebus_murinus	ENSMICP00000042363	79.3706	72.3776
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	78.8644	72.5552	aotus_nancymaae	ENSANAP00000015549	77.1605	70.9877
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	68.7697	62.776	carlito_syrichta	ENSTSYP00000023565	74.6575	68.1507
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	89.2744	86.1199	cervus_hanglu_yarkandensis	ENSCHYP00000028120	75.8713	73.1903
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	78.8644	75.0789	cervus_hanglu_yarkandensis	ENSCHYP00000025742	84.4595	80.4054
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	71.6088	65.9306	microtus_ochrogaster	ENSMOCP00000001284	78.5467	72.3183
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	53.9432	47.6341	rhinolophus_ferrumequinum	ENSRFEP00010025899	54.9839	48.5531
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	76.3407	69.4006	neovison_vison	ENSNVIP00000013119	65.4054	59.4595
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	37.224	26.183	caenorhabditis_elegans	Y39A1C.3.1	40.1361	28.2313
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	31.8612	22.3975	caenorhabditis_elegans	F46F11.2.1	37.8277	26.5918
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	33.123	23.0284	caenorhabditis_elegans	M01E11.5.1	39.6226	27.5472
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	23.3438	15.142	drosophila_melanogaster	FBpp0076798	37.9487	24.6154
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	22.3975	13.8801	ciona_intestinalis	ENSCINP00000032715	36.5979	22.6804
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	31.8612	15.7729	astyanax_mexicanus	ENSAMXP00000048926	12.0095	5.9453
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	22.7129	15.4574	oncorhynchus_kisutch	ENSOKIP00005000242	21.1765	14.4118
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	32.1767	17.6656	oncorhynchus_kisutch	ENSOKIP00005044967	9.95122	5.46341
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	17.9811	10.7256	oncorhynchus_kisutch	ENSOKIP00005079167	15.7025	9.36639
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	24.6057	16.7192	oncorhynchus_mykiss	ENSOMYP00000113407	20.5805	13.9842
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	29.3375	16.0883	oncorhynchus_mykiss	ENSOMYP00000137197	10.3104	5.6541
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	21.4511	10.0946	oncorhynchus_mykiss	ENSOMYP00000130300	9.36639	4.40771
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	31.8612	22.7129	salmo_trutta	ENSSTUP00000087223	34.9481	24.9135
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	23.3438	14.1956	salmo_trutta	ENSSTUP00000016672	9.07975	5.52147
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	30.2839	17.0347	cyclopterus_lumpus	ENSCLMP00005011358	11.5942	6.52174
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	30.5994	15.4574	cyclopterus_lumpus	ENSCLMP00005034313	9.03166	4.56238
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	18.612	17.6656	sphenodon_punctatus	ENSSPUP00000015018	61.4583	58.3333
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	73.1861	64.9842	naja_naja	ENSNNAP00000020625	63.388	56.2842
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	15.142	7.57098	leptobrachium_leishanense	ENSLLEP00000043999	12.8342	6.41711
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	35.9621	24.6057	geospiza_fortis	ENSGFOP00000008370	37.1335	25.4072
ENSSTOG00000024314	ictidomys_tridecemlineatus	ENSSTOP00000025854	19.5584	12.9338	ciona_savignyi	ENSCSAVP00000011162	35.4286	23.4286

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression