RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSTOG00000011185	Gene ID	101955191	Accession	-
Symbol		Alias	-	Full Name	leucine rich pentatricopeptide repeat containing
Status	Confidence	Length	107233 bases	Strand	Plus strand
Position	JH393318.1 : 7961042 - 8068274	RNA binding domain	PPR_3 , PPR_long , PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSTOP00000010042	PPR_3	PF13812	2.7e-29	1
ENSSTOP00000010042	PPR_3	PF13812	2.7e-29	2
ENSSTOP00000010042	PPR_3	PF13812	2.7e-29	3
ENSSTOP00000010042	PPR_long	PF17177	1.4e-24	4
ENSSTOP00000010042	PPR	PF01535	7.5e-27	5
ENSSTOP00000010042	PPR	PF01535	7.5e-27	6
ENSSTOP00000010042	PPR	PF01535	7.5e-27	7
ENSSTOP00000029316	PPR_3	PF13812	4.2e-29	1
ENSSTOP00000029316	PPR_3	PF13812	4.2e-29	2
ENSSTOP00000029316	PPR_3	PF13812	4.2e-29	3
ENSSTOP00000029316	PPR_long	PF17177	2.5e-24	4
ENSSTOP00000029316	PPR	PF01535	1.1e-26	5
ENSSTOP00000029316	PPR	PF01535	1.1e-26	6
ENSSTOP00000029316	PPR	PF01535	1.1e-26	7

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSTOT00000042408	5899	1433aa	ENSSTOP00000029316
-	ENSSTOT00000011197	5779	1393aa	ENSSTOP00000010042

Gene Model

Click here to download ENSSTOG00000011185's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSTOG00000011185's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSTOG00000011185

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	71.598	65.5966	choloepus_hoffmanni	ENSCHOP00000003231	73.9726	67.7722
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	87.2296	78.9951	dasypus_novemcinctus	ENSDNOP00000009798	89.8634	81.3803
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	57.7809	48.0809	dasypus_novemcinctus	ENSDNOP00000020662	77.7465	64.6948
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	60.642	52.7565	erinaceus_europaeus	ENSEEUP00000011323	67.5739	58.7869
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	87.2994	77.739	echinops_telfairi	ENSETEP00000005410	89.8062	79.9713
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	87.7181	79.2742	cercocebus_atys	ENSCATP00000003773	86.037	77.755
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	87.5785	79.6232	macaca_nemestrina	ENSMNEP00000015080	89.8354	81.675
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	88.4159	81.1584	mustela_putorius_furo	ENSMPUP00000011706	90.6943	83.2498
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	86.3224	80.1117	tursiops_truncatus	ENSTTRP00000006060	88.8011	82.4121
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	83.6706	74.4592	loxodonta_africana	ENSLAFP00000019681	85.5817	76.1599
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	62.5262	56.8039	procavia_capensis	ENSPCAP00000001447	65.2111	59.2431
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	89.6022	82.7634	capra_hircus	ENSCHIP00000022836	92.3077	85.2624
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	75.7153	69.2254	ochotona_princeps	ENSOPRP00000015336	78.396	71.6763
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	87.6483	77.5994	cricetulus_griseus_chok1gshd	ENSCGRP00001015743	90.2299	79.8851
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	76.9714	69.9232	cavia_porcellus	ENSCPOP00000000178	91.6874	83.2918
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	80.6001	74.529	vicugna_pacos	ENSVPAP00000008367	86.1298	79.6421
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	86.5318	79.2742	otolemur_garnettii	ENSOGAP00000011476	89.0165	81.5506
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	86.9505	78.5764	chinchilla_lanigera	ENSCLAP00000007399	89.255	80.659
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	70.6211	60.0837	sorex_araneus	ENSSARP00000000394	86.1277	73.2766
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	87.5087	80.1117	chlorocebus_sabaeus	ENSCSAP00000009186	89.6996	82.1173
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	86.1828	78.1577	nomascus_leucogenys	ENSNLEP00000020435	89.5576	81.2183
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	89.7418	80.6699	microtus_ochrogaster	ENSMOCP00000006424	92.3851	83.046
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	86.5318	80.7397	pteropus_vampyrus	ENSPVAP00000001898	88.9527	82.9986
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	88.6253	81.8562	panthera_tigris_altaica	ENSPTIP00000000544	91.1047	84.1463
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	89.2533	82.2052	myotis_lucifugus	ENSMLUP00000009670	91.6846	84.4444
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	60.0837	41.3817	petromyzon_marinus	ENSPMAP00000002368	65.5251	45.1294
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	16.12	11.5143	eptatretus_burgeri	ENSEBUP00000025786	59.6899	42.6357
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	75.157	59.8744	latimeria_chalumnae	ENSLACP00000015933	75.2621	59.9581
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	74.529	57.083	lepisosteus_oculatus	ENSLOCP00000020256	72.5051	55.5329
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	67.0621	48.1507	danio_rerio	ENSDARP00000111776	65.7769	47.2279
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	66.5736	48.4997	fundulus_heteroclitus	ENSFHEP00000017838	67.1358	48.9092
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	66.9923	48.7788	xiphophorus_maculatus	ENSXMAP00000018156	67.8445	49.3993
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	65.6664	47.5227	oryzias_latipes	ENSORLP00000005797	65.4381	47.3574
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	64.0614	46.6853	astatotilapia_calliptera	ENSACLP00000035182	70.1835	51.1468
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	48.2205	39.0789	pelodiscus_sinensis	ENSPSIP00000007632	79.6083	64.5161
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	11.0258	9.49058	pelodiscus_sinensis	ENSPSIP00000017651	67.5214	58.1197
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	68.4578	49.0579	cyprinodon_variegatus	ENSCVAP00000026988	69.0359	49.4722
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	24.1451	17.7251	oryzias_melastigma	ENSOMEP00000028638	67.3152	49.4163
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	61.6888	45.4292	neolamprologus_brichardi	ENSNBRP00000017258	73.361	54.0249
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	24.0056	11.0956	saccharomyces_cerevisiae	YLR067C	35.6477	16.4767
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	64.6197	47.104	pundamilia_nyererei	ENSPNYP00000001107	69.0015	50.2981
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	67.1319	48.4997	poecilia_formosa	ENSPFOP00000011667	68.1303	49.221
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	65.6664	47.3133	amphilophus_citrinellus	ENSACIP00000012395	70.1192	50.5216
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	66.0851	48.9881	tetraodon_nigroviridis	ENSTNIP00000010279	68.673	50.9065
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	69.2254	50.2442	maylandia_zebra	ENSMZEP00005036721	69.3222	50.3145
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	66.2247	47.1738	amphiprion_percula	ENSAPEP00000004420	68.8679	49.0566
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	67.411	48.8486	gasterosteus_aculeatus	ENSGACP00000014169	69.3467	50.2513
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	66.2945	46.6853	stegastes_partitus	ENSSPAP00000000169	65.8807	46.3939
ENSSTOG00000011185	ictidomys_tridecemlineatus	ENSSTOP00000029316	69.5045	49.5464	amphiprion_ocellaris	ENSAOCP00000002732	69.6991	49.6851

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression