RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070029587	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	10952 bases	Strand	Plus strand
Position	6 : 102321571 - 102332522	RNA binding domain	B3_4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070050645	B3_4	PF03483	4.3e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00070059469	3437	561aa	ENSSSCP00070050645

Gene Model

Click here to download ENSSSCG00070029587's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070029587's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070046674	30.8824	16.1765	sus_scrofa_usmarc	ENSSSCP00070050645	29.9465	15.6863
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070025670	30.8998	15.7895	sus_scrofa_usmarc	ENSSSCP00070050645	32.4421	16.5775

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.3654	94.8307	sus_scrofa	ENSSSCP00000049377	91.7667	91.2521
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.3654	94.6524	sus_scrofa_jinhua	ENSSSCP00060028299	91.7667	91.0806
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.3654	94.8307	sus_scrofa_meishan	ENSSSCP00040009210	91.7667	91.2521
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.5437	95.0089	sus_scrofa_berkshire	ENSSSCP00065032484	91.9382	91.4237
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.3654	94.8307	sus_scrofa_bamei	ENSSSCP00050007467	91.7667	91.2521
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.5437	95.0089	sus_scrofa_landrace	ENSSSCP00045029539	91.9382	91.4237
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	91.4438	86.9875	ovis_aries_rambouillet	ENSOARP00020004041	84.375	80.2632
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.3654	94.8307	sus_scrofa_rongchang	ENSSSCP00030006449	91.7667	91.2521
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.5437	95.0089	sus_scrofa_pietrain	ENSSSCP00055005399	91.9382	91.4237
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.5437	95.0089	sus_scrofa_hampshire	ENSSSCP00035041369	91.9382	91.4237
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	79.6791	78.4314	sus_scrofa_tibetan	ENSSSCP00015034833	88.1657	86.785
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	91.8004	87.7005	bos_taurus	ENSBTAP00000006219	88.6403	84.6816
ENSSSCG00070029587	sus_scrofa_usmarc	ENSSSCP00070050645	95.3654	94.8307	sus_scrofa_largewhite	ENSSSCP00025024254	91.7667	91.2521

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression