RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070027650	Gene ID		Accession	-
Symbol	RPS11	Alias	-	Full Name	Sus scrofa ribosomal protein S11 (RPS11), mRNA.
Status	Confidence	Length	2385 bases	Strand	Minus strand
Position	6 : 111640682 - 111643066	RNA binding domain	Ribosomal_S17
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070047091	Ribosomal_S17	PF00366	1.1e-28	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS11-201	ENSSSCT00070055456	807	158aa	ENSSSCP00070047091

Gene Model

Click here to download ENSSSCG00070027650's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070027650's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070027650

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa	ENSSSCP00000003432	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	81.0127	77.2152	equus_caballus	ENSECAP00000000228	82.0513	78.2051
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_jinhua	ENSSSCP00060048216	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_meishan	ENSSSCP00040008918	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_berkshire	ENSSSCP00065036081	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_bamei	ENSSSCP00050027435	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_landrace	ENSSSCP00045017103	94.6108	94.6108
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	ovis_aries_rambouillet	ENSOARP00020011632	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_rongchang	ENSSSCP00030043487	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_pietrain	ENSSSCP00055013829	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_hampshire	ENSSSCP00035047965	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_wuzhishan	ENSSSCP00005009634	94.6108	94.6108
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_tibetan	ENSSSCP00015005179	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	bos_taurus	ENSBTAP00000018491	100	100
ENSSSCG00070027650	sus_scrofa_usmarc	ENSSSCP00070047091	100	100	sus_scrofa_largewhite	ENSSSCP00025048495	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression