RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070027249	Gene ID	100627402	Accession	-
Symbol	THRAP3	Alias	-	Full Name	thyroid hormone receptor associated protein 3
Status	Confidence	Length	62588 bases	Strand	Minus strand
Position	6 : 74923361 - 74985948	RNA binding domain	THRAP3_BCLAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070046363	THRAP3_BCLAF1	PF15440	1.1e-204	1
ENSSSCP00070046364	THRAP3_BCLAF1	PF15440	1.1e-204	1
ENSSSCP00070046365	THRAP3_BCLAF1	PF15440	1.1e-204	1
ENSSSCP00070046366	THRAP3_BCLAF1	PF15440	1.1e-204	1
ENSSSCP00070046367	THRAP3_BCLAF1	PF15440	1.1e-204	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
THRAP3-204	ENSSSCT00070054659	4522	958aa	ENSSSCP00070046363
THRAP3-203	ENSSSCT00070054660	4364	958aa	ENSSSCP00070046364
THRAP3-202	ENSSSCT00070054661	4058	958aa	ENSSSCP00070046365
THRAP3-201	ENSSSCT00070054662	4491	958aa	ENSSSCP00070046366
THRAP3-205	ENSSSCT00070054663	4417	958aa	ENSSSCP00070046367

Gene Model

Click here to download ENSSSCG00070027249's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070027249's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070042152	56.4604	41.2595	sus_scrofa_usmarc	ENSSSCP00070046363	54.2798	39.666
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070037499	38.4097	20.8895	sus_scrofa_usmarc	ENSSSCP00070046363	29.7495	16.1795

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa	ENSSSCP00000023804	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	99.2693	97.7036	equus_caballus	ENSECAP00000018679	99.2693	97.7036
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_jinhua	ENSSSCP00060039208	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_meishan	ENSSSCP00040035927	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_berkshire	ENSSSCP00065005163	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_bamei	ENSSSCP00050039016	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_landrace	ENSSSCP00045007281	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	98.5386	97.4948	ovis_aries_rambouillet	ENSOARP00020017274	98.5386	97.4948
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_rongchang	ENSSSCP00030023979	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_pietrain	ENSSSCP00055033160	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_hampshire	ENSSSCP00035006066	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_wuzhishan	ENSSSCP00005021287	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_tibetan	ENSSSCP00015014205	100	100
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	98.8518	97.8079	bos_taurus	ENSBTAP00000071657	98.8518	97.8079
ENSSSCG00070027249	sus_scrofa_usmarc	ENSSSCP00070046363	100	100	sus_scrofa_largewhite	ENSSSCP00025022731	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression