RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00070026845	Gene ID	110259379	Accession	-
Symbol	POLRMT	Alias	-	Full Name	RNA polymerase mitochondrial
Status	Confidence	Length	14717 bases	Strand	Plus strand
Position	2 : 72183629 - 72198345	RNA binding domain	RNA_pol , RPOL_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00070045644	RNA_pol	PF00940	7.7e-159	1
ENSSSCP00070045644	RPOL_N	PF14700	5.9e-54	2
ENSSSCP00070045640	RNA_pol	PF00940	1.2e-132	1
ENSSSCP00070045640	RNA_pol	PF00940	1.2e-132	2
ENSSSCP00070045640	RPOL_N	PF14700	5.9e-54	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLRMT-202	ENSSSCT00070053834	4692	1224aa	ENSSSCP00070045640
POLRMT-201	ENSSSCT00070053838	3854	1219aa	ENSSSCP00070045644

Gene Model

Click here to download ENSSSCG00070026845's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00070026845's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070026845

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	95.5065	95.5065	sus_scrofa	ENSSSCP00000037516	95.8983	95.8983
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	80.3105	72.549	equus_caballus	ENSECAP00000052675	75.3834	68.0982
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.8889	86.8464	sus_scrofa_jinhua	ENSSSCP00060028267	84.6034	82.6594
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.9706	87.0098	sus_scrofa_meishan	ENSSSCP00040041399	84.6812	82.8149
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.9706	87.0098	sus_scrofa_berkshire	ENSSSCP00065005847	84.6812	82.8149
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.8889	86.8464	sus_scrofa_bamei	ENSSSCP00050041235	84.6034	82.6594
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.9706	87.0098	sus_scrofa_landrace	ENSSSCP00045033594	84.6812	82.8149
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.8889	86.7647	sus_scrofa_rongchang	ENSSSCP00030012754	84.6034	82.5816
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	82.0261	80.0654	sus_scrofa_pietrain	ENSSSCP00055035212	83.597	81.5987
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.9706	87.0098	sus_scrofa_hampshire	ENSSSCP00035044495	84.6812	82.8149
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	95.4248	95.4248	sus_scrofa_tibetan	ENSSSCP00015000573	95.8949	95.8949
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	82.598	75.1634	bos_taurus	ENSBTAP00000020034	82.598	75.1634
ENSSSCG00070026845	sus_scrofa_usmarc	ENSSSCP00070045640	88.9706	87.0098	sus_scrofa_largewhite	ENSSSCP00025004516	84.6812	82.8149

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression