RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00070026682 | Gene ID |
|
Accession |
- |
Symbol |
APOBEC3B |
Alias |
- |
Full Name |
Sus scrofa apolipoprotein B mRNA editing enzyme catalytic subunit 3B (APOBEC3B), mRNA. |
Status |
Confidence |
Length |
17661 bases |
Strand |
Plus strand |
Position |
5 : 98111469 - 98129129 |
RNA binding domain |
APOBEC_N , APOBEC_C |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00070045450 |
APOBEC_N |
PF08210 |
9.2e-92 |
1 |
ENSSSCP00070045450 |
APOBEC_N |
PF08210 |
9.2e-92 |
2 |
ENSSSCP00070045450 |
APOBEC_C |
PF05240 |
2.2e-58 |
3 |
ENSSSCP00070045450 |
APOBEC_C |
PF05240 |
2.2e-58 |
4 |
ENSSSCP00070045423 |
APOBEC_N |
PF08210 |
4e-51 |
1 |
ENSSSCP00070045423 |
APOBEC_C |
PF05240 |
9.9e-32 |
2 |
ENSSSCP00070045407 |
APOBEC_N |
PF08210 |
1.6e-42 |
1 |
ENSSSCP00070045407 |
APOBEC_C |
PF05240 |
2e-25 |
2 |
ENSSSCP00070045467 |
APOBEC_N |
PF08210 |
3.4e-41 |
1 |
ENSSSCP00070045467 |
APOBEC_C |
PF05240 |
1.5e-25 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
APOBEC3B-202 |
ENSSSCT00070053564 |
1401 |
233aa |
ENSSSCP00070045407 |
APOBEC3B-201 |
ENSSSCT00070053583 |
1682 |
280aa |
ENSSSCP00070045423 |
APOBEC3B-203 |
ENSSSCT00070053616 |
1548 |
416aa |
ENSSSCP00070045450 |
APOBEC3B-204 |
ENSSSCT00070053634 |
1014 |
205aa |
ENSSSCP00070045467 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070021446 | 38.5593 | 22.0339 | sus_scrofa_usmarc | ENSSSCP00070045450 | 21.875 | 12.5 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070021543 | 48.6607 | 30.3571 | sus_scrofa_usmarc | ENSSSCP00070045450 | 26.2019 | 16.3462 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070003559 | 41.9643 | 24.5536 | sus_scrofa_usmarc | ENSSSCP00070045450 | 22.5962 | 13.2212 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 44.2308 | 43.75 | sus_scrofa | ENSSSCP00000049864 | 75.7202 | 74.8971 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 37.9808 | 30.0481 | equus_caballus | ENSECAP00000034895 | 63.7097 | 50.4032 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 99.5192 | 99.5192 | sus_scrofa_jinhua | ENSSSCP00060026447 | 99.0431 | 99.0431 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 86.5385 | 84.1346 | sus_scrofa_meishan | ENSSSCP00040030766 | 63.0473 | 61.296 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 99.7596 | 99.7596 | sus_scrofa_berkshire | ENSSSCP00065010706 | 99.2823 | 99.2823 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 86.2981 | 83.8942 | sus_scrofa_bamei | ENSSSCP00050046215 | 62.8722 | 61.1208 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 86.0577 | 83.8942 | sus_scrofa_landrace | ENSSSCP00045037601 | 62.697 | 61.1208 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 65.1442 | 53.8462 | ovis_aries_rambouillet | ENSOARP00020015068 | 72.8495 | 60.2151 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 99.5192 | 99.5192 | sus_scrofa_rongchang | ENSSSCP00030002890 | 99.0431 | 99.0431 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 99.7596 | 99.7596 | sus_scrofa_pietrain | ENSSSCP00055018929 | 99.2823 | 99.2823 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 99.5192 | 99.5192 | sus_scrofa_hampshire | ENSSSCP00035017128 | 99.0431 | 99.0431 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 94.4712 | 93.2692 | sus_scrofa_wuzhishan | ENSSSCP00005009898 | 85.8079 | 84.7162 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 85.8173 | 83.6538 | sus_scrofa_tibetan | ENSSSCP00015019326 | 62.5219 | 60.9457 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 67.3077 | 54.0865 | bos_taurus | ENSBTAP00000003115 | 72.7273 | 58.4416 |
ENSSSCG00070026682 | sus_scrofa_usmarc | ENSSSCP00070045450 | 99.7596 | 99.7596 | sus_scrofa_largewhite | ENSSSCP00025003097 | 99.2823 | 99.2823 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |