Description

Ensembl ID ENSSSCG00070026682 Gene ID Accession -
Symbol APOBEC3B Alias - Full Name Sus scrofa apolipoprotein B mRNA editing enzyme catalytic subunit 3B (APOBEC3B), mRNA.
Status Confidence Length 17661 bases Strand Plus strand
Position 5 : 98111469 - 98129129 RNA binding domain APOBEC_N , APOBEC_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00070045450 APOBEC_N PF08210 9.2e-92 1
ENSSSCP00070045450 APOBEC_N PF08210 9.2e-92 2
ENSSSCP00070045450 APOBEC_C PF05240 2.2e-58 3
ENSSSCP00070045450 APOBEC_C PF05240 2.2e-58 4
ENSSSCP00070045423 APOBEC_N PF08210 4e-51 1
ENSSSCP00070045423 APOBEC_C PF05240 9.9e-32 2
ENSSSCP00070045407 APOBEC_N PF08210 1.6e-42 1
ENSSSCP00070045407 APOBEC_C PF05240 2e-25 2
ENSSSCP00070045467 APOBEC_N PF08210 3.4e-41 1
ENSSSCP00070045467 APOBEC_C PF05240 1.5e-25 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
APOBEC3B-202 ENSSSCT00070053564 1401 233aa ENSSSCP00070045407
APOBEC3B-201 ENSSSCT00070053583 1682 280aa ENSSSCP00070045423
APOBEC3B-203 ENSSSCT00070053616 1548 416aa ENSSSCP00070045450
APOBEC3B-204 ENSSSCT00070053634 1014 205aa ENSSSCP00070045467

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007002144638.559322.0339sus_scrofa_usmarcENSSSCP0007004545021.87512.5
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007002154348.660730.3571sus_scrofa_usmarcENSSSCP0007004545026.201916.3462
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007000355941.964324.5536sus_scrofa_usmarcENSSSCP0007004545022.596213.2212

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545044.230843.75sus_scrofaENSSSCP0000004986475.720274.8971
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545037.980830.0481equus_caballusENSECAP0000003489563.709750.4032
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545099.519299.5192sus_scrofa_jinhuaENSSSCP0006002644799.043199.0431
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545086.538584.1346sus_scrofa_meishanENSSSCP0004003076663.047361.296
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545099.759699.7596sus_scrofa_berkshireENSSSCP0006501070699.282399.2823
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545086.298183.8942sus_scrofa_bameiENSSSCP0005004621562.872261.1208
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545086.057783.8942sus_scrofa_landraceENSSSCP0004503760162.69761.1208
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545065.144253.8462ovis_aries_rambouilletENSOARP0002001506872.849560.2151
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545099.519299.5192sus_scrofa_rongchangENSSSCP0003000289099.043199.0431
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545099.759699.7596sus_scrofa_pietrainENSSSCP0005501892999.282399.2823
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545099.519299.5192sus_scrofa_hampshireENSSSCP0003501712899.043199.0431
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545094.471293.2692sus_scrofa_wuzhishanENSSSCP0000500989885.807984.7162
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545085.817383.6538sus_scrofa_tibetanENSSSCP0001501932662.521960.9457
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545067.307754.0865bos_taurusENSBTAP0000000311572.727358.4416
ENSSSCG00070026682sus_scrofa_usmarcENSSSCP0007004545099.759699.7596sus_scrofa_largewhiteENSSSCP0002500309799.282399.2823

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression