Description

Ensembl ID ENSSSCG00070024999 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 45949 bases Strand Plus strand
Position 15 : 68104693 - 68150641 RNA binding domain RAP , FAST_2 , FAST_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00070042226 RAP PF08373 2e-16 1
ENSSSCP00070042226 FAST_2 PF08368 2.7e-28 2
ENSSSCP00070042226 FAST_1 PF06743 3.9e-21 3
ENSSSCP00070042222 RAP PF08373 2.2e-16 1
ENSSSCP00070042222 FAST_2 PF08368 3e-28 2
ENSSSCP00070042222 FAST_1 PF06743 4.2e-21 3
ENSSSCP00070042217 RAP PF08373 2.3e-16 1
ENSSSCP00070042217 FAST_2 PF08368 3.2e-28 2
ENSSSCP00070042217 FAST_1 PF06743 7.7e-22 3
ENSSSCP00070042200 RAP PF08373 2.3e-16 1
ENSSSCP00070042200 FAST_2 PF08368 3.2e-28 2
ENSSSCP00070042200 FAST_1 PF06743 1.4e-10 3
ENSSSCP00070042198 RAP PF08373 2.3e-16 1
ENSSSCP00070042198 FAST_2 PF08368 2.5e-28 2
ENSSSCP00070042198 FAST_1 PF06743 8.3e-23 3
ENSSSCP00070042207 RAP PF08373 2.3e-16 1
ENSSSCP00070042207 FAST_2 PF08368 1.2e-13 2
ENSSSCP00070042207 FAST_1 PF06743 6.1e-23 3
ENSSSCP00070042212 RAP PF08373 2.3e-16 1
ENSSSCP00070042212 FAST_2 PF08368 2.7e-28 2
ENSSSCP00070042212 FAST_1 PF06743 4.4e-23 3
ENSSSCP00070042220 RAP PF08373 2.3e-16 1
ENSSSCP00070042220 FAST_2 PF08368 3.3e-11 2
ENSSSCP00070042220 FAST_1 PF06743 7.1e-23 3
ENSSSCP00070042197 RAP PF08373 2.4e-16 1
ENSSSCP00070042197 FAST_2 PF08368 2.9e-28 2
ENSSSCP00070042197 FAST_1 PF06743 9.8e-23 3
ENSSSCP00070042204 RAP PF08373 2.4e-16 1
ENSSSCP00070042204 FAST_2 PF08368 2.9e-28 2
ENSSSCP00070042204 FAST_1 PF06743 9.8e-23 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00070049959 3510 836aa ENSSSCP00070042197
- ENSSSCT00070049960 3441 813aa ENSSSCP00070042198
- ENSSSCT00070049962 3381 793aa ENSSSCP00070042200
- ENSSSCT00070049967 3719 836aa ENSSSCP00070042204
- ENSSSCT00070049970 3590 793aa ENSSSCP00070042207
- ENSSSCT00070049975 3220 811aa ENSSSCP00070042212
- ENSSSCT00070049980 3184 799aa ENSSSCP00070042217
- ENSSSCT00070049983 3181 798aa ENSSSCP00070042220
- ENSSSCT00070049985 3163 792aa ENSSSCP00070042222
- ENSSSCT00070049989 3052 755aa ENSSSCP00070042226

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007001682338.972823.1118sus_scrofa_usmarcENSSSCP0007004220430.861218.3014
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007003472935.994215.82sus_scrofa_usmarcENSSSCP0007004220429.665113.0383
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007002526237.820518.9103sus_scrofa_usmarcENSSSCP0007004220428.229714.1148
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007003181431.537215.8479sus_scrofa_usmarcENSSSCP0007004220423.803811.9617

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220497.607797.3684sus_scrofaENSSSCP0000002154496.56896.3314
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220491.985683.4928equus_caballusENSECAP0000003356192.427983.8942
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220410099.8804sus_scrofa_jinhuaENSSSCP0006001737110099.8804
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220410099.7608sus_scrofa_meishanENSSSCP0004004090510099.7608
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP00070042204100100sus_scrofa_berkshireENSSSCP00065004146100100
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220410099.7608sus_scrofa_bameiENSSSCP0005004800010099.7608
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP00070042204100100sus_scrofa_landraceENSSSCP00045023555100100
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220491.86684.0909ovis_aries_rambouilletENSOARP0002000588692.307784.4952
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220499.880499.8804sus_scrofa_rongchangENSSSCP0003000827999.880499.8804
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP00070042204100100sus_scrofa_pietrainENSSSCP00055038775100100
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP00070042204100100sus_scrofa_hampshireENSSSCP00035043439100100
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP00070042204100100sus_scrofa_wuzhishanENSSSCP00005028463100100
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP00070042204100100sus_scrofa_tibetanENSSSCP00015028098100100
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220491.985684.5694bos_taurusENSBTAP0000005157092.427984.976
ENSSSCG00070024999sus_scrofa_usmarcENSSSCP0007004220410099.8804sus_scrofa_largewhiteENSSSCP0002503027210099.8804

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression